SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 57184,57424,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57184 - Growth factor receptor domain
57424 - LDL receptor-like module

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Equus_caballus_76_2   (Horse)   1
Procavia_capensis_76_1   (Cape rock hyrax)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Poecilia_formosa_76   (Amazon molly)   0
Rhodnius_prolixus_22 0

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Equus_caballus_69_2   (Horse)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 3
Protein_Data_Bank_(all_PDB_sequenc) 0
Uniprot_2018_03_genome 90
NCBI_2017_08_genome 20
TargetDB__(Targets) 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]