SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 57424,57424,57196,63825 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
57424 - LDL receptor-like module
57196 - EGF/Laminin
63825 - YWTD domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Mus_musculus_76_38   (House mouse)   0
Ochotona_princeps_76   (American pika)   0
Ovis_aries_76_3.1   (Sheep)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 0
Octopus_bimaculoides_280 0
Lottia_gigantea_   (Owl limpet)   0
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Megaselia_scalaris_22 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_brenneri_ 0
Acropora_digitifera_v1.0 0

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Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Ochotona_princeps_69   (American pika)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
STRING_v9.0.5_(STRING) 2
NCBI_2017_08_genome 1
Uniprot_2018_03_genome 63

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