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Home > SCOP hierarchy > Domain combination - 57667,90229,_gap_

Domain combinations for 57667,90229,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57667 - beta-beta-alpha zinc fingers
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 2

Pan_troglodytes_76_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_76_3.1 (Western gorilla) 1

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 0

Macaca_mulatta_76_1 (Rhesus monkey) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_76_3 (Small-eared galago) 1

Microcebus_murinus_76_1 (Gray mouse lemur) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 1

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 0

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 0

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Ochotona_princeps_76 (American pika) 0

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 2

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 1

Equus_caballus_76_2 (Horse) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 0

Pteropus_vampyrus_76_1 (Large flying fox) 0

Erinaceus_europaeus_76 (Western European hedgehog) 1

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 1

Macropus_eugenii_76_1.0 (Tammar wallaby) 0

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 0

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Ornithorhynchus_anatinus_76_5 (Platypus) 0

Saccoglossus_kowalevskii_v3.0 1

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 0

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 0

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_laevis_ (African clawed frog) 1

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 0

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 1

Takifugu_rubripes_76_4 (Torafugu) 1

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 1

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 2

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1

Ciona_intestinalis_76 (Vase tunicate) 1

Adineta_vaga 1

Crassostrea_gigas_22 (Pacific oyster) 1

Capitella_sp._I_ 1

Nasonia_vitripennis_ (Jewel wasp) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 2

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Rhodnius_prolixus_22 1

Strigamia_maritima_22 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Schistosoma_mansoni_ 1

Nematostella_vectensis_1.0 (Starlet sea anemone) 1

Hydra_vulgaris 1

Phycomyces_blakesleeanus_ 1

Rhizopus_oryzae_RA_99-880_ 1

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 2

Citrus_clementina_v165 1

Citrus_sinensis_v154 (Sweet orange) 1

Thellungiella_halophila_v173 1

Capsella_rubella_v183 1

Arabidopsis_lyrata_ (Lyrate rockcress) 1

Arabidopsis_thaliana_10 (Thale cress) 1

Medicago_truncatula_ (Barrel medic) 1

Phaseolus_vulgaris_v186 (French bean) 1

Glycine_max_v109 (Soybean) 1

Cucumis_sativus_v122 (Cucumber) 2

Fragaria_vesca_ (Wild strawberry) 1

Prunus_persica_v139 (Peach) 1

Linum_usitatissimum_v200 (Flax) 2

Manihot_esculenta_v147 (Cassava) 2

Populus_trichocarpa_v156 (Black cottonwood) 1

Vitis_vinifera_ (Wine grape) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 1

Aquilegia_coerulea_v195 2

Brachypodium_distachyon_ (Stiff brome) 1

Oryza_barthii_22 (African wild rice) 1

Oryza_meridionalis_22 1

Oryza_glumaepatula_22 0

Oryza_glaberrima (African rice) 1

Oryza_brachyantha_22 (Malo sina) 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 0

Panicum_virgatum_v202 (Switchgrass) 2

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 1

Zea_mays_v181 (Maize) 1

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 1

Musa_acuminata_22 (Wild Malaysian banana) 1

Physcomitrella_patens 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 3

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 1

Hordeum_vulgare_22 (Domesticated barley) 3

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 0

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 0

Otolemur_garnettii_69_3 (Small-eared galago) 1

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 0

Mus_musculus_69_38 (House mouse) 1

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 0

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Ochotona_princeps_69 (American pika) 0

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Felis_catus_69 (Domestic cat) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 0

Pteropus_vampyrus_69_1 (Large flying fox) 0

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Macropus_eugenii_69_1.0 (Tammar wallaby) 0

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 0

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Ornithorhynchus_anatinus_69_5 (Platypus) 0

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 0

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 0

Latimeria_chalumnae_69_1 (Coelacanth) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 1

Takifugu_rubripes_69_4 (Torafugu) 1

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 1

Danio_rerio_69_9 (Zebrafish) 1

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1

Ciona_intestinalis_69 (Vase tunicate) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 3

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Ricinus_communis__(Early_assembly) (Castor bean) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 1

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

Phoenix_dactylifera__(Early_draft) (Date palm) 1

Uniprot_2018_03_genome 2010

NCBI_2017_08_genome 636

TargetDB__(Targets) 0

STRING_v9.0.5_(STRING) 41

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Domain combinations for 57667,90229,_gap_ superfamilies in groups of genomes