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  Home > SCOP hierarchy > Domain combination - 57716,_gap_

Domain combinations for 57716,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57716 - Glucocorticoid receptor-like (DNA-binding domain)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   57
Pan_troglodytes_76_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_76_3.1   (Western gorilla)   18
Pongo_abelii_76_2   (Sumatran orangutan)   13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15
Papio_anubis_76   (Olive baboon)   15
Macaca_mulatta_76_1   (Rhesus monkey)   26
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30
Otolemur_garnettii_76_3   (Small-eared galago)   14
Microcebus_murinus_76_1   (Gray mouse lemur)   14
Rattus_norvegicus_76_5.0   (Norway rat)   15
Mus_musculus_76_38   (House mouse)   26
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   15
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   12
Cavia_porcellus_76_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_76_2   (Rabbit)   21
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   9
Sus_scrofa_76_10.2   (Pig)   11
Bos_taurus_76_3.1   (Cattle)   13
Ovis_aries_76_3.1   (Sheep)   12
Vicugna_pacos_76_1   (Alpaca)   7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12
Mustela_putorius_furo_76_1.0   (Domestic ferret)   11
Ailuropoda_melanoleuca_76_1   (Giant panda)   18
Canis_familiaris_76_3.1   (Dog)   18
Felis_catus_76_6.2   (Domestic cat)   12
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   8
Erinaceus_europaeus_76   (Western European hedgehog)   12
Procavia_capensis_76_1   (Cape rock hyrax)   7
Loxodonta_africana_76_3   (African savanna elephant)   15
Echinops_telfairi_76   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   20
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_76_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_76_5   (Platypus)   15
Saccoglossus_kowalevskii_v3.0 44
Petromyzon_marinus_76_7.0   (Sea lamprey)   5
Meleagris_gallopavo_76_2   (Turkey)   5
Gallus_gallus_76_4   (Chicken)   8
Anas_platyrhynchos_76_1.0   (Mallard)   7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_76_2.0   (Green anole)   9
Xenopus_laevis_   (African clawed frog)   24
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   22
Latimeria_chalumnae_76_1   (Coelacanth)   17
Lepisosteus_oculatus_76   (Spotted gar)   15
Gadus_morhua_76_1   (Atlantic cod)   19
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   8
Takifugu_rubripes_76_4   (Torafugu)   25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   17
Oryzias_latipes_76_1   (Japanese medaka)   18
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   19
Poecilia_formosa_76   (Amazon molly)   20
Oreochromis_niloticus_76_1.0   (Nile tilapia)   27
Astyanax_mexicanus_76   (Mexican tetra)   20
Danio_rerio_76_9   (Zebrafish)   47
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   18
Adineta_vaga 36
Octopus_bimaculoides_280 13
Crassostrea_gigas_22   (Pacific oyster)   30
Lottia_gigantea_   (Owl limpet)   13
Helobdella_robusta_ 28
Capitella_sp._I_ 64
Danaus_plexippus_OGS1.0   (Monarch butterfly)   15
Heliconius_melpomene_   (Postman butterfly)   14
Bombyx_mori_   (Domestic silkworm)   26
Nasonia_vitripennis_   (Jewel wasp)   10
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   26
Linepithema_humile_v1.1   (Argentine ant)   64
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   27
Solenopsis_invicta_v.2.2.3   (Red fire ant)   35
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   27
Atta_cephalotes_v1.1 27
Camponotus_floridanus_v3.3   (Florida carpenter ant)   23
Lucilia_cuprina   (Australian sheep blowfly)   13
Drosophila_grimshawi_1.3 15
Drosophila_willistoni_1.3 16
Drosophila_pseudoobscura_2.13 19
Drosophila_persimilis_1.3 18
Drosophila_suzukii 15
Drosophila_yakuba_1.3 13
Drosophila_simulans_1.3 22
Drosophila_sechellia_1.3 20
Drosophila_melanogaster_76_5   (Fruit fly)   25
Drosophila_erecta_1.3 15
Drosophila_ananassae_1.3 12
Drosophila_virilis_1.2 13
Drosophila_mojavensis_1.3 15
Megaselia_scalaris_22 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   61
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   70
Anopheles_darlingi_22   (American malaria mosquito)   15
Anopheles_gambiae_49_3j   (African malaria mosquito)   36
Tribolium_castaneum_3.0   (Red flour beetle)   24
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   10
Acyrthosiphon_pisum_   (Pea aphid)   34
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   37
Strigamia_maritima_22 16
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   7
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   39
Pristionchus_pacificus_ 48
Meloidogyne_incognita_   (Southern root-knot nematode)   19
Meloidogyne_hapla_ 12
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 12
Caenorhabditis_remanei_ 10
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 8
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 5
Echinococcus_multilocularis_ 4
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   6
Schistosoma_mansoni_ 10
Mnemiopsis_leidyi   (Sea walnut)   7
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 21
Nematostella_vectensis_1.0   (Starlet sea anemone)   18
Hydra_vulgaris 33
Amphimedon_queenslandica 38
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 3
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 7
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 11
Mucor_circinelloides_ 6
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 3
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 2
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 2
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 4
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 4
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 5
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   3
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 3
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 3
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 3
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 3
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4
Trichoderma_harzianum_CBS_226.95_v1.0 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   4
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 4
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 4
Pyrenophora_teres_f._teres_22 4
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4
Paracoccidioides_brasiliensis_Pb18_ 5
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 3
Ajellomyces_dermatitidis_SLH14081_ 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 4
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 3
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 4
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 2
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 3
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 5
Schizosaccharomyces_octosporus_yFS286_ 4
Schizosaccharomyces_japonicus_yFS275_ 5
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 5
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 3
Dictyostelium_purpureum_ 12
Entamoeba_dispar_1.2 11
Entamoeba_invadens_1.2 9
Entamoeba_histolytica_1 10
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 21
Citrus_clementina_v165 11
Citrus_sinensis_v154   (Sweet orange)   16
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   21
Capsella_rubella_v183 11
Arabidopsis_lyrata_   (Lyrate rockcress)   10
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   7
Medicago_truncatula_   (Barrel medic)   16
Phaseolus_vulgaris_v186   (French bean)   7
Glycine_max_v109   (Soybean)   25
Cucumis_sativus_v122   (Cucumber)   14
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   15
Prunus_persica_v139   (Peach)   9
Linum_usitatissimum_v200   (Flax)   14
Manihot_esculenta_v147   (Cassava)   15
Populus_trichocarpa_v156   (Black cottonwood)   17
Vitis_vinifera_   (Wine grape)   8
Mimulus_guttatus_v140   (Spotted monkey flower)   8
Solanum_lycopersicum_v.2.3   (Tomato)   11
Solanum_tuberosum_   (Potato)   15
Actinidia_chinensis_Hongyang_ 8
Aquilegia_coerulea_v195 16
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   24
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   12
Oryza_barthii_22   (African wild rice)   11
Oryza_meridionalis_22 13
Oryza_glumaepatula_22 13
Oryza_glaberrima   (African rice)   10
Oryza_punctata_22 8
Oryza_nivara_22 14
Oryza_brachyantha_22   (Malo sina)   11
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16
Oryza_sativa_v193   (Rice)   16
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   12
Panicum_virgatum_v202   (Switchgrass)   21
Setaria_italica_v164   (Foxtail millet)   10
Zea_mays_subsp._mays_   (Maize)   18
Zea_mays_v181   (Maize)   19
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   6
Musa_acuminata_22   (Wild Malaysian banana)   19
Amborella_trichopoda_22 7
Physcomitrella_patens 13
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 8
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 6
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 4
Porphyridium_purpureum_02_2012 4
Thecamonas_trahens_ATCC_50062_ 6
Bigelowiella_natans_CCMP2755_22 4
Giardia_lamblia_2.3 2
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 4
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 3
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 4
Trypanosoma_brucei_TREU927_v4.1 4
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 2
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 3
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 3
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 6
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 7
Paramecium_tetraurelia_ 17
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 3
Cryptosporidium_hominis 2
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 2
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 2
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 6
Trichomonas_vaginalis_ 5
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 8
Coriobacterium_glomerans_PW2 0
Ilumatobacter_coccineus 0
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 0
Streptosporangium_roseum_DSM_43021 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Actinoplanes_sp._SE50/110 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_marinum_M 1
Intrasporangium_calvum_DSM_43043 0
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_chlorophenolicus_A6 0
Arthrobacter_aurescens_TC1 0
Arthrobacter_sp._Rue61a 0
Arthrobacter_sp._FB24 0
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Symbiobacterium_thermophilum_IAM_14863 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulolyticum_H10 0
Clostridium_thermocellum_ATCC_27405 0
Thermaerobacter_marianensis_DSM_12885 0
Sulfobacillus_acidophilus_DSM_10332 0
Candidatus_Desulforudis_audaxviator_MP104C 0
Thermincola_potens_JR 0
Pelotomaculum_thermopropionicum_SI 0
Desulfosporosinus_acidiphilus_SJ4 0
Desulfosporosinus_orientis_DSM_765 0
Desulfitobacterium_hafniense_Y51 0
Desulfitobacterium_dehalogenans_ATCC_51507 0
Desulfotomaculum_reducens_MI-1 0
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_kuznetsovii_DSM_6115 0
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Desulfotomaculum_ruminis_DSM_2154 0
Heliobacterium_modesticaldum_Ice1 0
Alkaliphilus_oremlandii_OhILAs 0
Clostridium_sp._BNL1100 0
Clostridium_novyi_NT 0
Clostridium_ljungdahlii_DSM_13528 0
Clostridium_kluyveri_DSM_555 0
Clostridium_tetani_E88 0
Clostridium_cellulovorans_743B 1
Clostridium_botulinum_A_str._ATCC_3502 0
Clostridium_acetobutylicum_ATCC_824 0
Mahella_australiensis_50-1_BON 0
Thermosediminibacter_oceani_DSM_16646 0
Caldicellulosiruptor_obsidiansis_OB47 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_lactoaceticus_6A 0
Caldicellulosiruptor_kristjanssonii_177R1B 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 0
Thermoanaerobacterium_xylanolyticum_LX-11 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Tepidanaerobacter_acetatoxydans_Re1 0
Thermoanaerobacter_tengcongensis_MB4 0
Carboxydothermus_hydrogenoformans_Z-2901 0
Moorella_thermoacetica_ATCC_39073 0
Ammonifex_degensii_KC4 0
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 0
Thermoanaerobacter_pseudethanolicus_ATCC_33223 0
Thermoanaerobacter_sp._X514 0
Thermoanaerobacter_italicus_Ab9 0
Thermoanaerobacter_wiegelii_Rt8.B1 0
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 0
Acetohalobium_arabaticum_DSM_5501 0
Halothermothrix_orenii_H_168 0
Exiguobacterium_sp._MH3 0
Exiguobacterium_sp._AT1b 0
Exiguobacterium_sibiricum_255-15 0
Kyrpidia_tusciae_DSM_2912 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_sp._JDR-2 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 0
Solibacillus_silvestris_StLB046 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Oceanobacillus_iheyensis_HTE831 0
Anoxybacillus_flavithermus_WK1 0
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Geobacillus_sp._WCH70 0
Geobacillus_thermodenitrificans_NG80-2 0
Bacillus_sp._1NLA3E 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_halodurans_C-125 0
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_anthracis_str._A0248 0
Bacillus_pseudofirmus_OF4 0
Bacillus_clausii_KSM-K16 0
Bacillus_cellulosilyticus_DSM_2522 0
Bacillus_pumilus_SAFR-032 0
Bacillus_megaterium_DSM_319 0
Bacillus_coagulans_2-6 0
Streptobacillus_moniliformis_DSM_12112 0
Leptotrichia_buccalis_C-1013-b 0
Bacteriovorax_marinus_SJ 0
Syntrophobacter_fumaroxidans_MPOB 0
Anaeromyxobacter_sp._Fw109-5 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Stigmatella_aurantiaca_DW4/3-1 1
Achromobacter_xylosoxidans_A8 1
Sphingomonas_sp._MM-1 1
Methylobacterium_extorquens_AM1 1
Methylocystis_sp._SC2 1
Haemophilus_influenzae_PittEE 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 1
Natrialba_magadii_ATCC_43099 1
Halomicrobium_mukohataei_DSM_12286 1
Halorhabdus_utahensis_DSM_12940 1
Natronomonas_pharaonis_DSM_2160 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   55
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   17
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   33
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 3
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 3
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 4
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 5
Saccharomyces_cerevisiae_Vin13 4
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   9
Hordeum_vulgare_22   (Domesticated barley)   9
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10
Trypanosoma_brucei_Lister_427_v4.1 4
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Chamaesiphon_minutus_PCC_6605 0
Frankia_sp._EuI1c 1
Streptomyces_albus_J1074 0
Streptomyces_rapamycinicus_NRRL_5491 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Mycobacterium_kansasii_ATCC_12478 1
Clostridium_thermocellum_DSM_1313 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Sulfobacillus_acidophilus_TPY 0
Clostridium_acidurici_9a 0
Desulfosporosinus_meridiei_DSM_13257 0
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Desulfitobacterium_hafniense_DCB-2 0
Desulfotomaculum_gibsoniae_DSM_7213 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_kluyveri_NBRC_12016 0
Clostridium_tetani_genome_12124569 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Thermoanaerobacterium_thermosaccharolyticum_M0795 0
Thermacetogenium_phaeum_DSM_12270 0
Thermoanaerobacter_sp._X513 0
Halobacteroides_halobius_DSM_5150 0
Exiguobacterium_antarcticum_B7 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 0
Thermobacillus_composti_KWC4 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y4.1MC1 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Amphibacillus_xylanus_NBRC_15112 0
Bacillus_licheniformis_9945A 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_infantis_NRRL_B-14911 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Bacillus_toyonensis_BCT-7112 0
Bacillus_thuringiensis_HD-771 0
Bacillus_thuringiensis_HD-789 0
Bacillus_thuringiensis_MC28 0
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_YBT-1518 0
Bacillus_thuringiensis_Bt407 0
Bacillus_thuringiensis_serovar_konkukian_str._97-27 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_B4264 0
Bacillus_cereus_G9842 0
Bacillus_cereus_Q1 0
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_E33L 0
Bacillus_cereus_ATCC_14579 0
Bacillus_cereus_ATCC_10987 0
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Bacillus_coagulans_36D1 0
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_sp._K 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 1
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   16
Pongo_abelii_69_2   (Sumatran orangutan)   12
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   18
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21
Otolemur_garnettii_69_3   (Small-eared galago)   13
Microcebus_murinus_69_1   (Gray mouse lemur)   14
Rattus_norvegicus_69_3.4   (Norway rat)   9
Mus_musculus_69_38   (House mouse)   10
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   15
Cavia_porcellus_69_3   (Domestic guinea pig)   11
Oryctolagus_cuniculus_69_2   (Rabbit)   19
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   9
Sus_scrofa_69_10.2   (Pig)   11
Bos_taurus_69_3.1   (Cattle)   13
Vicugna_pacos_69_1   (Alpaca)   7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12
Mustela_putorius_furo_69_1.0   (Domestic ferret)   11
Ailuropoda_melanoleuca_69_1   (Giant panda)   15
Canis_familiaris_69_3.1   (Dog)   12
Felis_catus_69   (Domestic cat)   10
Equus_caballus_69_2   (Horse)   12
Myotis_lucifugus_69_2.0   (Little brown bat)   16
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   8
Erinaceus_europaeus_69   (Western European hedgehog)   12
Procavia_capensis_69_1   (Cape rock hyrax)   7
Loxodonta_africana_69_3   (African savanna elephant)   11
Echinops_telfairi_69   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_69_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   14
Petromyzon_marinus_69_7.0   (Sea lamprey)   5
Meleagris_gallopavo_69_2   (Turkey)   5
Gallus_gallus_69_2   (Chicken)   6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_69_2.0   (Green anole)   10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   18
Latimeria_chalumnae_69_1   (Coelacanth)   16
Gadus_morhua_69_1   (Atlantic cod)   17
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   8
Takifugu_rubripes_69_4   (Torafugu)   10
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   16
Oryzias_latipes_69_1   (Japanese medaka)   16
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   19
Oreochromis_niloticus_69_1.0   (Nile tilapia)   22
Danio_rerio_69_9   (Zebrafish)   31
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   8
Drosophila_melanogaster_69_5   (Fruit fly)   15
Caenorhabditis_elegans_69_215   (Roundworm)   5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   57
Homo_sapiens__(NCBI_version)   (Human)   21
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   10
Heliconius_numata__(Incomplete) 11
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   12
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 3
Encephalitozoon_cuniculi_(endoparasite) 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 8
Malus_x_domestica_(Duplicate)   (Apple)   15
Ricinus_communis__(Early_assembly)   (Castor bean)   8
Nicotiana_benthamiana_0.4.4_(Early_draft) 28
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   11
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   11
Phoenix_dactylifera__(Early_draft)   (Date palm)   3
Guillardia_theta_(nucleomorph) 1
NCBI_plasmid_sequences_(Plasmids) 1
Protozoadb_2010_08_(Protozoadb) 113
STRING_v9.0.5_(STRING) 1088
Uniprot_2018_03_genome 39900
Core_Eukaryotic_Genes_458_(CEGMA) 12
NCBI_2017_08_genome 13130
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 130
TargetDB__(Targets) 26
NCBI_viral_sequences_(Viral) 0
PDB_chains_(SCOP_1.75)_(PDB) 2
Protein_Data_Bank_(all_PDB_sequenc) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.