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Domain combinations for 57850,49599,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box
49599 - TRAF domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Sus_scrofa_76_10.2   (Pig)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 8
Octopus_bimaculoides_280 3
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Caenorhabditis_japonica_ 1
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 4
Amphimedon_queenslandica 30
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 0
Phycomyces_blakesleeanus_ 1
Rhizomucor_miehei_CAU432_ 2
Sporobolomyces_roseus_IAM_13481_ 1
Piloderma_croceum_F_1598_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Heterobasidion_annosum_ 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 1
Chaetomium_globosum_CBS_148.51_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 1
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 0
Candida_lusitaniae_ATCC_42720_ 1
Catenaria_anguillulae_PL171_v1.0 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 5
Pinus_taeda   (Loblolly pine)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 8
Thellungiella_halophila_v173 0
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   3
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   2
Vitis_vinifera_   (Wine grape)   1
Aquilegia_coerulea_v195 4
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   4
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   2
Oryza_nivara_22 3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   7
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   1
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 1
Cyanophora_paradoxa_ 4
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Ectocarpus_siliculosus 1
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Paramecium_tetraurelia_ 6
Tetrahymena_thermophila_SB210_1_ 2
Ichthyophthirius_multifiliis_strain_G5_ 2
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Plasmodium_falciparum_3D7_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Naegleria_gruberi_ 3
Emiliania_huxleyi_CCMP1516_ 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Paracoccidioides_brasiliensis_Pb01_ 0
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Candida_albicans_WO-1_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   9
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Protozoadb_2010_08_(Protozoadb) 2
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 37
Uniprot_2018_03_genome 3858
NCBI_2017_08_genome 587

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