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  Home > SCOP hierarchy > Domain combination - 57850,_gap_

Domain combinations for 57850,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   133
Pan_troglodytes_76_2.1.4   (Chimpanzee)   32
Gorilla_gorilla_76_3.1   (Western gorilla)   39
Pongo_abelii_76_2   (Sumatran orangutan)   31
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   32
Papio_anubis_76   (Olive baboon)   33
Macaca_mulatta_76_1   (Rhesus monkey)   50
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   67
Otolemur_garnettii_76_3   (Small-eared galago)   38
Microcebus_murinus_76_1   (Gray mouse lemur)   26
Rattus_norvegicus_76_5.0   (Norway rat)   35
Mus_musculus_76_38   (House mouse)   69
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   23
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   34
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   34
Cavia_porcellus_76_3   (Domestic guinea pig)   30
Oryctolagus_cuniculus_76_2   (Rabbit)   30
Ochotona_princeps_76   (American pika)   25
Tupaia_belangeri_76   (Northern tree shrew)   22
Sus_scrofa_76_10.2   (Pig)   36
Bos_taurus_76_3.1   (Cattle)   35
Ovis_aries_76_3.1   (Sheep)   26
Vicugna_pacos_76_1   (Alpaca)   21
Tursiops_truncatus_76_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_76_1.0   (Domestic ferret)   31
Ailuropoda_melanoleuca_76_1   (Giant panda)   35
Canis_familiaris_76_3.1   (Dog)   40
Felis_catus_76_6.2   (Domestic cat)   32
Equus_caballus_76_2   (Horse)   35
Myotis_lucifugus_76_2.0   (Little brown bat)   35
Pteropus_vampyrus_76_1   (Large flying fox)   29
Sorex_araneus_76_1   (European shrew)   16
Erinaceus_europaeus_76   (Western European hedgehog)   23
Procavia_capensis_76_1   (Cape rock hyrax)   20
Loxodonta_africana_76_3   (African savanna elephant)   35
Echinops_telfairi_76   (Small Madagascar hedgehog)   17
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   33
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   23
Macropus_eugenii_76_1.0   (Tammar wallaby)   25
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   33
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   37
Ornithorhynchus_anatinus_76_5   (Platypus)   30
Saccoglossus_kowalevskii_v3.0 50
Petromyzon_marinus_76_7.0   (Sea lamprey)   29
Meleagris_gallopavo_76_2   (Turkey)   34
Gallus_gallus_76_4   (Chicken)   37
Anas_platyrhynchos_76_1.0   (Mallard)   24
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   24
Ficedula_albicollis_76_1.0   (Collared flycatcher)   27
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   37
Anolis_carolinensis_76_2.0   (Green anole)   30
Xenopus_laevis_   (African clawed frog)   92
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   40
Latimeria_chalumnae_76_1   (Coelacanth)   43
Lepisosteus_oculatus_76   (Spotted gar)   43
Gadus_morhua_76_1   (Atlantic cod)   41
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   39
Takifugu_rubripes_76_4   (Torafugu)   50
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   37
Oryzias_latipes_76_1   (Japanese medaka)   38
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   36
Poecilia_formosa_76   (Amazon molly)   39
Oreochromis_niloticus_76_1.0   (Nile tilapia)   40
Astyanax_mexicanus_76   (Mexican tetra)   43
Danio_rerio_76_9   (Zebrafish)   62
Oikopleura_dioica 28
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   21
Ciona_intestinalis_76   (Vase tunicate)   19
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   43
Adineta_vaga 97
Octopus_bimaculoides_280 28
Crassostrea_gigas_22   (Pacific oyster)   26
Lottia_gigantea_   (Owl limpet)   44
Helobdella_robusta_ 54
Capitella_sp._I_ 23
Danaus_plexippus_OGS1.0   (Monarch butterfly)   12
Heliconius_melpomene_   (Postman butterfly)   13
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   19
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   28
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   21
Linepithema_humile_v1.1   (Argentine ant)   22
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   24
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   22
Atta_cephalotes_v1.1 20
Camponotus_floridanus_v3.3   (Florida carpenter ant)   17
Lucilia_cuprina   (Australian sheep blowfly)   19
Drosophila_grimshawi_1.3 23
Drosophila_willistoni_1.3 21
Drosophila_pseudoobscura_2.13 26
Drosophila_persimilis_1.3 28
Drosophila_suzukii 18
Drosophila_yakuba_1.3 23
Drosophila_simulans_1.3 20
Drosophila_sechellia_1.3 25
Drosophila_melanogaster_76_5   (Fruit fly)   44
Drosophila_erecta_1.3 20
Drosophila_ananassae_1.3 23
Drosophila_virilis_1.2 23
Drosophila_mojavensis_1.3 21
Megaselia_scalaris_22 10
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   17
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   23
Anopheles_darlingi_22   (American malaria mosquito)   12
Anopheles_gambiae_49_3j   (African malaria mosquito)   16
Tribolium_castaneum_3.0   (Red flour beetle)   23
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   21
Acyrthosiphon_pisum_   (Pea aphid)   23
Rhodnius_prolixus_22 20
Daphnia_pulex_   (Common water flea)   66
Strigamia_maritima_22 24
Sarcoptes_scabiei 10
Tetranychus_urticae_   (Two-spotted spider mite)   30
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   24
Pristionchus_pacificus_ 43
Meloidogyne_incognita_   (Southern root-knot nematode)   37
Meloidogyne_hapla_ 28
Onchocerca_volvulus_22 22
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   21
Caenorhabditis_japonica_ 23
Caenorhabditis_brenneri_ 53
Caenorhabditis_remanei_ 54
Caenorhabditis_elegans_76_235   (Roundworm)   41
Caenorhabditis_briggsae_2 40
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 21
Echinococcus_multilocularis_ 17
Echinococcus_granulosus_ 16
Taenia_solium_   (Pork tapeworm)   28
Schistosoma_mansoni_ 17
Mnemiopsis_leidyi   (Sea walnut)   16
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 17
Nematostella_vectensis_1.0   (Starlet sea anemone)   35
Hydra_vulgaris 24
Amphimedon_queenslandica 52
Trichoplax_adhaerens_ 14
Proterospongia_sp._ATCC_50818_ 8
Monosiga_brevicollis_ 12
Sphaeroforma_arctica_JP610_ 11
Capsaspora_owczarzaki_ATCC_30864_ 6
Conidiobolus_coronatus_NRRL28638_v1.0 4
Mortierella_verticillata_NRRL_6337_ 7
Phycomyces_blakesleeanus_ 6
Rhizopus_oryzae_RA_99-880_ 12
Mucor_circinelloides_ 14
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 10
Sporisorium_reilianum_22 4
Ustilago_maydis_ 3
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 9
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 22
Melampsora_laricis-populina_ 9
Rhodotorula_graminis_WP1_v1.0 6
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 17
Piloderma_croceum_F_1598_v1.0 17
Serpula_lacrymans_var._lacrymans_S7.9_ 10
Coniophora_puteana 9
Hydnomerulius_pinastri_v2.0 10
Paxillus_rubicundulus_Ve08.2h10_v1.0 13
Pisolithus_microcarpus_441_v1.0 14
Pisolithus_tinctorius_Marx_270_v1.0 10
Scleroderma_citrinum_Foug_A_v1.0 11
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   9
Amanita_thiersii_Skay4041_v1.0 13
Amanita_muscaria_Koide_v1.0   (Fly agaric)   14
Galerina_marginata_v1.0 25
Hebeloma_cylindrosporum_h7_v2.0 11
Laccaria_bicolor_S238N-H82_ 16
Agaricus_bisporus_var._bisporus_ 8
Schizophyllum_commune_ 16
Stereum_hirsutum_FP-91666_SS1__v1.0 11
Heterobasidion_annosum_ 8
Gloeophyllum_trabeumv1.0 12
Punctularia_strigosozonata_v1.0 12
Sebacina_vermifera_MAFF_305830_v1.0 14
Fomitiporia_mediterranea_v1.0 9
Tulasnella_calospora_AL13/4D_v1.0 12
Postia_placenta_ 7
Wolfiporia_cocos_MD-104_SS10__v1.0 15
Fomitopsis_pinicolav1.0 21
Fomitopsis_pinicola_FP-58527_SS1_v3.0 24
Phanerochaete_chrysosporium_RP-78_2.1 7
Dichomitus_squalens 13
Trametes_versicolor_v1.0 13
Tremella_mesenterica_   (Witches' butter)   4
Daldinia_eschscholzii_EC12_v1.0 9
Apiospora_montagnei_NRRL_25634_v1.0 10
Magnaporthe_poae_ATCC_64411_22 6
Magnaporthe_grisea_70-15_ 5
Podospora_anserina_ 7
Sporotrichum_thermophile_ATCC_42464_ 6
Thielavia_terrestris_NRRL_8126_ 11
Chaetomium_globosum_CBS_148.51_ 6
Neurospora_tetrasperma_ 8
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   9
Verticillium_albo-atrum_VaMs.102_ 8
Verticillium_dahliae_VdLs.17_ 8
Acremonium_alcalophilumv_1.0 7
Glomerella_graminicola_22 9
Fusarium_graminearum_ 7
Nectria_haematococca_mpVI_ 7
Fusarium_oxysporum_f._sp._lycopersici_4286_ 8
Fusarium_verticillioides_7600_ 9
Trichoderma_asperellum_CBS_433.97_v1.0 6
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 9
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   7
Botrytis_cinerea_B05.10_ 9
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 13
Leptosphaeria_maculans_22 13
Setosphaeria_turcica_v1.0 10
Cochliobolus_miyabeanus_ATCC_44560_v1.0 13
Cochliobolus_victoriae_FI3_v1.0 13
Cochliobolus_carbonum_26-R-13_v1.0 12
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   10
Alternaria_brassicicola_ 13
Cochliobolus_lunatus_m118_v2.0 11
Pyrenophora_teres_f._teres_22 16
Pyrenophora_tritici-repentis_ 18
Stagonospora_nodorum_ 29
Mycosphaerella_graminicola_IPO323_ 8
Zasmidium_cellare_ATCC_36951_v1.0 13
Dothistroma_septosporum 14
Septoria_musiva_v1.0 10
Mycosphaerella_fijiensis_CIRAD86_ 10
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8
Paracoccidioides_brasiliensis_Pb18_ 6
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 9
Ajellomyces_dermatitidis_SLH14081_ 8
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 6
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 7
Trichophyton_rubrum_CBS_118892_ 6
Uncinocarpus_reesii_1704_ 6
Aspergillus_zonatus_v1.0 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 5
Penicillium_chrysogenum_v1.0 5
Aspergillus_acidus_v1.0 8
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 7
Aspergillus_nidulans_FGSC_A4_ 5
Aspergillus_sydowii_v1.0 11
Aspergillus_versicolor_v1.0 9
Aspergillus_glaucus 8
Aspergillus_carbonarius_ITEM_5010_ 5
Neosartorya_fischeri_NRRL_181_ 6
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 8
Aspergillus_wentii_v1.0 7
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 5
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 6
Penicillium_marneffei_ATCC_18224_ 5
Tuber_melanosporum_Mel28_22 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   7
Hansenula_polymorpha_v2.0 3
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 7
Candida_dubliniensis_CD36_ 6
Candida_tropicalis_MYA-3404_ 6
Candida_parapsilosis_ 5
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6
Pichia_stipitis_CBS_6054_ 7
Candida_guilliermondii_ATCC_6260_ 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 6
Wickerhamomyces_anomalus 7
Pichia_pastoris_GS115_ 6
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 7
Yarrowia_lipolytica_CLIB122 10
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 5
Kluyveromyces_thermotolerans_CBS_6340 6
Lachancea_kluyveri_ 7
Kluyveromyces_waltii 6
Ashbya_gossypii_ATCC_10895_ 5
Zygosaccharomyces_rouxii_ 6
Saccharomyces_mikatae_MIT 6
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   7
Saccharomyces_bayanus_MIT 7
Kluyveromyces_lactis 5
Schizosaccharomyces_cryophilus_OY26_22 4
Schizosaccharomyces_octosporus_yFS286_ 5
Schizosaccharomyces_japonicus_yFS275_ 4
Schizosaccharomyces_pombe   (Fission yeast)   5
Catenaria_anguillulae_PL171_v1.0 7
Allomyces_macrogynus_ATCC_38327_ 8
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 14
Dictyostelium_purpureum_ 17
Entamoeba_dispar_1.2 10
Entamoeba_invadens_1.2 10
Entamoeba_histolytica_1 9
Selaginella_moellendorffii_ 44
Pinus_taeda   (Loblolly pine)   33
Picea_abies   (Norway spruce)   19
Eucalyptus_grandis_v201   (Rose gum)   46
Theobroma_cacao_B97-61/B2_v1   (Cacao)   29
Gossypium_raimondii_v221 138
Citrus_clementina_v165 56
Citrus_sinensis_v154   (Sweet orange)   75
Thellungiella_halophila_v173 45
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   57
Capsella_rubella_v183 43
Arabidopsis_lyrata_   (Lyrate rockcress)   48
Arabidopsis_thaliana_10   (Thale cress)   48
Carica_papaya_   (Papaya)   27
Medicago_truncatula_   (Barrel medic)   72
Phaseolus_vulgaris_v186   (French bean)   57
Glycine_max_v109   (Soybean)   93
Cucumis_sativus_v122   (Cucumber)   49
Fragaria_vesca_   (Wild strawberry)   28
Malus_domestica_v196   (Apple)   62
Prunus_persica_v139   (Peach)   30
Linum_usitatissimum_v200   (Flax)   68
Manihot_esculenta_v147   (Cassava)   57
Populus_trichocarpa_v156   (Black cottonwood)   61
Vitis_vinifera_   (Wine grape)   32
Mimulus_guttatus_v140   (Spotted monkey flower)   40
Solanum_lycopersicum_v.2.3   (Tomato)   45
Solanum_tuberosum_   (Potato)   97
Actinidia_chinensis_Hongyang_ 45
Aquilegia_coerulea_v195 56
Triticum_urartu_22 33
Triticum_aestivum_22   (Bread wheat)   108
Aegilops_tauschii_22 29
Brachypodium_distachyon_   (Stiff brome)   46
Oryza_barthii_22   (African wild rice)   47
Oryza_meridionalis_22 39
Oryza_glumaepatula_22 53
Oryza_glaberrima   (African rice)   37
Oryza_punctata_22 46
Oryza_nivara_22 43
Oryza_brachyantha_22   (Malo sina)   40
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   67
Oryza_sativa_v193   (Rice)   66
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   39
Panicum_virgatum_v202   (Switchgrass)   100
Setaria_italica_v164   (Foxtail millet)   49
Zea_mays_subsp._mays_   (Maize)   86
Zea_mays_v181   (Maize)   90
Sorghum_bicolor_   (Sorghum)   35
Musa_balbisiana   (Balbis banana)   33
Musa_acuminata_22   (Wild Malaysian banana)   45
Amborella_trichopoda_22 17
Physcomitrella_patens 30
Coccomyxa_subellipsoidea_sp._C-169_v2 11
Asterochloris_sp._Cgr/DA1pho_v1.0 6
Chlorella_variabilis_sp._NC64A_ 18
Chlorella_vulgaris_ 8
Volvox_carteri_f._nagariensis_ 19
Volvox_carteri_v199 24
Chlamydomonas_reinhardtii_4.0 18
Ostreococcus_sp._RCC809_ 11
Ostreococcus_lucimarinus_CCE9901_ 12
Ostreococcus_tauri_ 9
Bathycoccus_prasinos_ 8
Micromonas_sp._RCC299_ 17
Micromonas_pusilla_CCMP1545_v3.0 10
Cyanidioschyzon_merolae_strain_10D_22 4
Cyanidioschyzon_merolae 4
Porphyridium_purpureum_02_2012 8
Thecamonas_trahens_ATCC_50062_ 5
Bigelowiella_natans_CCMP2755_22 29
Giardia_lamblia_2.3 7
Cyanophora_paradoxa_ 32
Leishmania_mexicana_2.4 6
Leishmania_major_strain_Friedlin_ 6
Leishmania_infantum_JPCM5_2.4 7
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4
Trypanosoma_vivax_ 6
Trypanosoma_cruzi_strain_CL_Brener 7
Trypanosoma_congolense_2.4 6
Trypanosoma_brucei_gambiense_v4.1 5
Trypanosoma_brucei_TREU927_v4.1 6
Ectocarpus_siliculosus 15
Aureococcus_anophagefferens_ 6
Albugo_laibachii_22 9
Pythium_iwayamai_DAOM_BR242034_22 10
Pythium_arrhenomanes_ATCC_12531_22 11
Pythium_ultimum_v1.7-2 15
Pythium_aphanidermatum_DAOM_BR444_22 10
Pythium_irregulare_DAOM_BR486_22 13
Pythium_vexans_DAOM_BR484_22 14
Phytophthora_ramorum_1.1   (Sudden oak death agent)   13
Phytophthora_sojae_1.1 12
Phytophthora_infestans_T30-4_ 12
Phytophthora_capsici_ 17
Hyaloperonospora_arabidopsidis_22 12
Phaeodactylum_tricornutumCCAP_1055/1 12
Fragilariopsis_cylindrus 30
Thalassiosira_pseudonana_CCMP1335 6
Perkinsus_marinus_ATCC_50983_ 18
Paramecium_tetraurelia_ 49
Tetrahymena_thermophila_SB210_1_ 19
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 4
Cryptosporidium_muris 7
Cryptosporidium_parvum_Iowa_II 5
Neospora_caninum 2
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 4
Babesia_bovis_T2Bo_ 6
Theileria_parva__ 5
Theileria_annulata 6
Plasmodium_falciparum_3D7_ 4
Plasmodium_vivax_SaI-1_7.0 3
Plasmodium_knowlesi_strain_H_ 3
Plasmodium_yoelii_ssp._yoelii_1_ 3
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 4
Symbiodinium_minutum_clade_B1_v1.2 39
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 12
Guillardia_theta_CCMP2712_v1.0_ 16
Emiliania_huxleyi_CCMP1516_ 122
Candidatus_Phytoplasma_mali 0
Thermobispora_bispora_DSM_43833 0
Streptosporangium_roseum_DSM_43021 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Kribbella_flavida_DSM_17836 0
Cellulomonas_flavigena_DSM_20109 1
Candidatus_Amoebophilus_asiaticus_5a2 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Parachlamydia_acanthamoebae_UV-7 0
Simkania_negevensis_Z 2
Desulfobulbus_propionicus_DSM_2032 0
Haliangium_ochraceum_DSM_14365 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Coxiella_burnetii_Dugway_5J108-111 0
Legionella_pneumophila_str._Corby 0
Candidatus_Caldiarchaeum_subterraneum 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   78
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   36
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   21
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   22
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   38
Cryptococcus_neoformans_var._grubii_H99_ 8
Cryptococcus_neoformans_B-3501A_ 10
Cryptococcus_neoformans_JEC21_ 7
Paracoccidioides_brasiliensis_Pb01_ 7
Paracoccidioides_brasiliensis_Pb03_ 5
Coccidioides_posadasii_str._Silveira_ 8
Coccidioides_immitis_RMSCC_3703_ 8
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 6
Ajellomyces_dermatitidis_ER-3_ 9
Histoplasma_capsulatum_H143 7
Histoplasma_capsulatum_H88 7
Histoplasma_capsulatum_G186AR 8
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 7
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 4
Saccharomyces_cerevisiae_CLIB382 1
Saccharomyces_cerevisiae_CLIB324 3
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 7
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 6
Saccharomyces_cerevisiae_VL3 6
Saccharomyces_cerevisiae_Vin13 4
Saccharomyces_cerevisiae_LalvinQA23 7
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 7
Saccharomyces_cerevisiae_W303 6
Saccharomyces_cerevisiae_JAY291 7
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 4
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 4
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 7
Saccharomyces_cerevisiae_YJM789 7
Saccharomyces_cerevisiae_RM11-1a 7
Saccharomyces_cerevisiae_RM11-1a_ 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7
Schizosaccharomyces_pombe_972h-_ 5
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   23
Hordeum_vulgare_22   (Domesticated barley)   100
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   42
Trypanosoma_brucei_Lister_427_v4.1 6
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 4
Plasmodium_falciparum_Dd2_ 4
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Actinoplanes_friuliensis_DSM_7358 0
Coxiella_burnetii_CbuG_Q212 0
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Legionella_pneumophila_2300/99_Alcoy 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   42
Pan_troglodytes_69_2.1.4   (Chimpanzee)   31
Gorilla_gorilla_69_3.1   (Western gorilla)   32
Pongo_abelii_69_2   (Sumatran orangutan)   30
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   32
Macaca_mulatta_69_1   (Rhesus monkey)   31
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   37
Otolemur_garnettii_69_3   (Small-eared galago)   36
Microcebus_murinus_69_1   (Gray mouse lemur)   26
Rattus_norvegicus_69_3.4   (Norway rat)   33
Mus_musculus_69_38   (House mouse)   28
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   23
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   33
Cavia_porcellus_69_3   (Domestic guinea pig)   29
Oryctolagus_cuniculus_69_2   (Rabbit)   30
Ochotona_princeps_69   (American pika)   25
Tupaia_belangeri_69   (Northern tree shrew)   22
Sus_scrofa_69_10.2   (Pig)   32
Bos_taurus_69_3.1   (Cattle)   34
Vicugna_pacos_69_1   (Alpaca)   21
Tursiops_truncatus_69_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_69_1.0   (Domestic ferret)   30
Ailuropoda_melanoleuca_69_1   (Giant panda)   33
Canis_familiaris_69_3.1   (Dog)   33
Felis_catus_69   (Domestic cat)   27
Equus_caballus_69_2   (Horse)   35
Myotis_lucifugus_69_2.0   (Little brown bat)   35
Pteropus_vampyrus_69_1   (Large flying fox)   29
Sorex_araneus_69_1   (European shrew)   16
Erinaceus_europaeus_69   (Western European hedgehog)   23
Procavia_capensis_69_1   (Cape rock hyrax)   20
Loxodonta_africana_69_3   (African savanna elephant)   29
Echinops_telfairi_69   (Small Madagascar hedgehog)   17
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   25
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   23
Macropus_eugenii_69_1.0   (Tammar wallaby)   25
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   28
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   33
Ornithorhynchus_anatinus_69_5   (Platypus)   28
Petromyzon_marinus_69_7.0   (Sea lamprey)   26
Meleagris_gallopavo_69_2   (Turkey)   30
Gallus_gallus_69_2   (Chicken)   30
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   24
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   33
Anolis_carolinensis_69_2.0   (Green anole)   31
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   34
Latimeria_chalumnae_69_1   (Coelacanth)   37
Gadus_morhua_69_1   (Atlantic cod)   38
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   35
Takifugu_rubripes_69_4   (Torafugu)   28
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   30
Oryzias_latipes_69_1   (Japanese medaka)   33
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   36
Oreochromis_niloticus_69_1.0   (Nile tilapia)   33
Danio_rerio_69_9   (Zebrafish)   41
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   17
Ciona_intestinalis_69   (Vase tunicate)   17
Drosophila_melanogaster_69_5   (Fruit fly)   26
Caenorhabditis_elegans_69_215   (Roundworm)   37
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7
Arabidopsis_thaliana_10   (Thale cress)   34

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   131
Homo_sapiens__(NCBI_version)   (Human)   53
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   28
Heliconius_numata__(Incomplete) 5
Loa_loa_v3.3_(Request)   (Eye worm)   24
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   27
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   17
Moniliophthora_perniciosa_FA553__(Genome_survey) 5
Encephalitozoon_intestinalis__(endoparasite) 5
Encephalitozoon_cuniculi_(endoparasite) 5
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4
Lotus_japonicus__(Early_assembly) 41
Malus_x_domestica_(Duplicate)   (Apple)   62
Ricinus_communis__(Early_assembly)   (Castor bean)   24
Nicotiana_benthamiana_0.4.4_(Early_draft) 83
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   45
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   45
Phoenix_dactylifera__(Early_draft)   (Date palm)   17
Guillardia_theta_(nucleomorph) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2
NCBI_viral_sequences_(Viral) 150
Protein_Data_Bank_(all_PDB_sequenc) 23
UniProt__viral_sequences_(Viral) 174
Core_Eukaryotic_Genes_458_(CEGMA) 0
TargetDB__(Targets) 75
Protozoadb_2010_08_(Protozoadb) 210
STRING_v9.0.5_(STRING) 2266
Uniprot_2018_03_genome 81729
NCBI_2017_08_genome 26238

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.