SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 57850,_gap_,101898 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box
101898 - NHL repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Otolemur_garnettii_76_3   (Small-eared galago)   0
Saccoglossus_kowalevskii_v3.0 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_76_1   (Coelacanth)   3
Astyanax_mexicanus_76   (Mexican tetra)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   18
Adineta_vaga 3
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   11
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 0
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 0
Sarcoptes_scabiei 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Trichinella_spiralis_22 1
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Amphimedon_queenslandica 12
Lachancea_kluyveri_ 0
Entamoeba_dispar_1.2 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Otolemur_garnettii_69_3   (Small-eared galago)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_69_1   (Coelacanth)   2
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Protozoadb_2010_08_(Protozoadb) 2
STRING_v9.0.5_(STRING) 30
Uniprot_2018_03_genome 1794
NCBI_2017_08_genome 517

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]