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  Home > SCOP hierarchy > Domain combination - 57850,_gap_,57845,_gap_,49265,49899

Domain combinations for 57850,_gap_,57845,_gap_,49265,49899 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box
57845 - B-box zinc-binding domain
49265 - Fibronectin type III
49899 - Concanavalin A-like lectins/glucanases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   6
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4
Papio_anubis_76   (Olive baboon)   7
Macaca_mulatta_76_1   (Rhesus monkey)   11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   12
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   16
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_76_2   (Rabbit)   3
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   7
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   6
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   5
Myotis_lucifugus_76_2.0   (Little brown bat)   5
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   3
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 2
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   2
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   4
Xenopus_laevis_   (African clawed frog)   6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_76_1   (Coelacanth)   5
Lepisosteus_oculatus_76   (Spotted gar)   4
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10
Takifugu_rubripes_76_4   (Torafugu)   19
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8
Oryzias_latipes_76_1   (Japanese medaka)   5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6
Poecilia_formosa_76   (Amazon molly)   6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   11
Astyanax_mexicanus_76   (Mexican tetra)   5
Danio_rerio_76_9   (Zebrafish)   8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 1
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5
Drosophila_pseudoobscura_2.13 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_virilis_1.2 1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Trichoplax_adhaerens_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   5
Mus_musculus_69_38   (House mouse)   6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   5
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   5
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   3
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   4
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9
Danio_rerio_69_9   (Zebrafish)   6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   19
Homo_sapiens__(NCBI_version)   (Human)   10
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6
NCBI_2017_08_genome 3019
STRING_v9.0.5_(STRING) 144
TargetDB__(Targets) 4
Uniprot_2018_03_genome 19240

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.