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  Home > SCOP hierarchy > Domain combination - 58069

Domain combinations for 58069 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

58069 - Virus ectodomain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Bombyx_mori_   (Domestic silkworm)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 0
Onchocerca_volvulus_22 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Hymenolepis_microstoma_ 0
Echinococcus_granulosus_ 0
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 0
Rhizopus_oryzae_RA_99-880_ 0
Rhizomucor_miehei_CAU432_ 0
Malassezia_globosa_CBS_7966_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Amanita_thiersii_Skay4041_v1.0 0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Schizophyllum_commune_ 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Verticillium_dahliae_VdLs.17_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Sclerotinia_sclerotiorum_ 0
Didymella_exigua_CBS_183.55_v1.0 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 0
Dothistroma_septosporum 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Pichia_membranifaciensv1.0 0
Pichia_pastoris_GS115_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_lactis 0
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_purpureum_ 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 0
Picea_abies   (Norway spruce)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Physcomitrella_patens 0
Chlorella_vulgaris_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Micromonas_sp._RCC299_ 0
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 0
Cyanophora_paradoxa_ 0
Trypanosoma_congolense_2.4 0
Albugo_laibachii_22 0
Pythium_ultimum_v1.7-2 0
Phytophthora_infestans_T30-4_ 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Trichomonas_vaginalis_ 0
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Cyanothece_sp._PCC_8802 0
Microcystis_aeruginosa_NIES-843 0
Mycoplasma_mycoides_subsp._capri_LC_str._95010 0
Mycoplasma_suis_KI3806 0
Mycoplasma_haemofelis_Ohio2 0
Catenulispora_acidiphila_DSM_44928 0
Stackebrandtia_nassauensis_DSM_44728 0
Frankia_symbiont_of_Datisca_glomerata 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Propionibacterium_propionicum_F0230a 0
Mycobacterium_vanbaalenii_PYR-1 0
Mycobacterium_africanum_GM041182 0
Mycobacterium_tuberculosis_KZN_1435 0
Mycobacterium_tuberculosis 0
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 0
Mycobacterium_rhodesiae_NBB3 0
Corynebacterium_efficiens_YS-314 0
Corynebacterium_glutamicum_R 0
Sanguibacter_keddieii_DSM_10542 0
Beutenbergia_cavernae_DSM_12333 0
Sphaerobacter_thermophilus_DSM_20745 0
Ruminococcus_albus_7 0
butyrate-producing_bacterium_SM4/1 0
Desulfotomaculum_reducens_MI-1 0
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_ruminis_DSM_2154 0
Eubacterium_rectale_ATCC_33656 0
Butyrivibrio_fibrisolvens 0
Mahella_australiensis_50-1_BON 0
Halanaerobium_praevalens_DSM_2228 0
Aerococcus_urinae_ACS-120-V-Col10a 0
Lactobacillus_crispatus_ST1 0
Lactobacillus_amylovorus_GRL1118 0
Lactobacillus_gasseri_ATCC_33323 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 0
Streptococcus_sp._I-G2 0
Exiguobacterium_sp._MH3 0
Exiguobacterium_sibiricum_255-15 0
Paenibacillus_mucilaginosus_3016 0
Anoxybacillus_flavithermus_WK1 0
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Geobacillus_sp._WCH70 0
Geobacillus_thermodenitrificans_NG80-2 0
Bacillus_amyloliquefaciens_FZB42 0
Bacillus_atrophaeus_1942 0
Gemmatimonas_aurantiaca_T-27 0
Chlorobium_chlorochromatii_CaD3 0
Saprospira_grandis_str._Lewin 0
Belliella_baltica_DSM_15883 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 0
Bacteroides_sp._CF50 0
Zunongwangia_profunda_SM-A87 0
Flavobacterium_columnare_ATCC_49512 0
Chlamydia_muridarum_Nigg 0
Sphaerochaeta_globus_str._Buddy 0
Treponema_azotonutricium_ZAS-9 0
Thermodesulfatator_indicus_DSM_15286 0
Flexistipes_sinusarabici_DSM_4947 0
Thermotoga_sp._RQ2 0
Thermotoga_naphthophila_RKU-10 0
Thermotoga_petrophila_RKU-1 0
Thermotoga_maritima_MSB8 0
Terriglobus_roseus_DSM_18391 0
Sulfurospirillum_deleyianum_DSM_6946 0
Campylobacter_jejuni_subsp._doylei_269.97 0
Desulfomonile_tiedjei_DSM_6799 0
Desulfobacterium_autotrophicum_HRM2 0
Geobacter_metallireducens_GS-15 0
Haliangium_ochraceum_DSM_14365 0
Myxococcus_xanthus_DK_1622 0
Cupriavidus_taiwanensis_LMG_19424 0
Cupriavidus_metallidurans_CH34 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._RPE64 0
Advenella_kashmirensis_WT001 0
Azospirillum_brasilense_Sp245 0
Ochrobactrum_anthropi_ATCC_49188 0
Agrobacterium_tumefaciens_str._C58 0
Agrobacterium_sp._H13-3 0
Agrobacterium_vitis_S4 0
Hyphomicrobium_sp._MC1 0
Gallibacterium_anatis_UMN179 0
Vibrio_sp._Ex25 0
Vibrio_parahaemolyticus_RIMD_2210633 0
Shewanella_sediminis_HAW-EB3 0
Shewanella_putrefaciens_CN-32 0
Frateuria_aurantia_DSM_6220 0
Alkalilimnicola_ehrlichii_MLHE-1 0
Legionella_pneumophila_str._Corby 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Halyomorpha_halys_symbiont 0
Acinetobacter_oleivorans_DR1 0
Acinetobacter_calcoaceticus_PHEA-2 0
Acinetobacter_baumannii_ATCC_17978 0
Ignisphaera_aggregans_DSM_17230 0
Pyrobaculum_arsenaticum_DSM_13514 0
Pyrobaculum_oguniense_TE7 0
Thermoproteus_uzoniensis_768-20 0
Methanosarcina_barkeri_str._Fusaro 0
Pyrococcus_furiosus_COM1 0
Methanococcus_aeolicus_Nankai-3 0
Methanothermus_fervidus_DSM_2088 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Aspergillus_fumigatus_A1163_ 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Prochlorococcus_marinus_str._MIT_9303 0
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._ATCC_51142 0
Cyanothece_sp._PCC_8801 0
Cyanobacterium_aponinum_PCC_10605 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 0
Stanieria_cyanosphaera_PCC_7437 0
Cylindrospermum_stagnale_PCC_7417 0
Candidatus_Mycoplasma_haemolamae_str._Purdue 0
Mycoplasma_haemofelis_str._Langford_1 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Mycobacterium_canettii_CIPT_140070017 0
Mycobacterium_canettii_CIPT_140060008 0
Mycobacterium_canettii_CIPT_140070008 0
Mycobacterium_canettii_CIPT_140070010 0
Mycobacterium_tuberculosis_EAI5 0
Mycobacterium_tuberculosis_UT205 0
Mycobacterium_tuberculosis_CTRI-2 0
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 0
Mycobacterium_tuberculosis_KZN_605 0
Mycobacterium_tuberculosis_KZN_4207 0
Mycobacterium_tuberculosis_CCDC5180 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_H37Ra 0
Mycobacterium_tuberculosis_str._Haarlem 0
Mycobacterium_tuberculosis_F11 0
Mycobacterium_tuberculosis_H37Rv 0
Mycobacterium_tuberculosis_CDC1551 0
Mycobacterium_bovis_AF2122/97 0
Mycobacterium_bovis_BCG_str._Korea_1168P 0
Mycobacterium_bovis_BCG_str._Mexico 0
Mycobacterium_bovis_BCG_str._Tokyo_172 0
Tropheryma_whipplei_str._Twist 0
Ruminococcus_champanellensis_18P13 0
Desulfosporosinus_meridiei_DSM_13257 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Lactobacillus_amylovorus_GRL_1112 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 0
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_CGSP14 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_suis_SS12 0
Streptococcus_suis_JS14 0
Exiguobacterium_antarcticum_B7 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 0
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 0
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 0
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 0
Bacillus_amyloliquefaciens_LFB112 0
Bacillus_amyloliquefaciens_CC178 0
Bacillus_amyloliquefaciens_Y2 0
Bacillus_amyloliquefaciens_IT-45 0
Bacillus_amyloliquefaciens_XH7 0
Bacillus_amyloliquefaciens_LL3 0
Bacillus_amyloliquefaciens_TA208 0
Bacillus_amyloliquefaciens_DSM_7 0
Bacillus_subtilis_XF-1 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._subtilis_str._BAB-1 0
Bacillus_subtilis_subsp._subtilis_str._BSP1 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 0
Borrelia_valaisiana_VS116 0
Thermotoga_maritima_MSB8 0
Campylobacter_coli_76339 0
Helicobacter_pylori_OK113 0
Myxococcus_stipitatus_DSM_14675 0
Burkholderia_sp._YI23 0
Burkholderia_cepacia_GG4 0
Micavibrio_aeruginosavorus_EPB 0
Rickettsia_canadensis_str._CA410 0
Vibrio_sp._EJY3 0
Vibrio_parahaemolyticus_BB22OP 0
Shewanella_sp._W3-18-1 0
Shewanella_baltica_BA175 0
Shewanella_putrefaciens_200 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Legionella_pneumophila_2300/99_Alcoy 0
Enterobacter_aerogenes_EA1509E 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_S16 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_PA7 0
Acinetobacter_sp.__SH024 0
Acinetobacter_calcoaceticus_ruh2202 0
Acinetobacter_baumannii_ZW85-1 0
Acinetobacter_baumannii_TYTH-1 0
Acinetobacter_baumannii_BJAB0868 0
Acinetobacter_baumannii_BJAB0715 0
Acinetobacter_baumannii_BJAB07104 0
Acinetobacter_baumannii_TCDC-AB0715 0
Acinetobacter_baumannii_D1279779 0
Acinetobacter_baumannii_MDR-TJ 0
Acinetobacter_baumannii_1656-2 0
Acinetobacter_baumannii__ATCC_19606 0
Acinetobacter_baumannii_AB307-0294 0
Acinetobacter_baumannii_AYE 0
Acinetobacter_baumannii_SDF 0
Acinetobacter_baumannii_MDR-ZJ06 0
Acinetobacter_baumannii_AB0057 0
Acinetobacter_baumannii_ACICU 0
Pyrococcus_furiosus_DSM_3638 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 0
NCBI_plasmid_sequences_(Plasmids) 0
PDB_chains_(SCOP_1.75)_(PDB) 32
STRING_v9.0.5_(STRING) 2
NCBI_viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 502
Protein_Data_Bank_(all_PDB_sequenc) 338
Protozoadb_2010_08_(Protozoadb) 0
NCBI_2017_08_genome 14
UniProt__viral_sequences_(Viral) 6278
Uniprot_2018_03_genome 14546
TargetDB__(Targets) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.