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Domain combinations for 63712,90112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63712 - Nicotinic receptor ligand binding domain-like
90112 - Neurotransmitter-gated ion-channel transmembrane pore

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   97
Pan_troglodytes_76_2.1.4   (Chimpanzee)   31
Gorilla_gorilla_76_3.1   (Western gorilla)   44
Pongo_abelii_76_2   (Sumatran orangutan)   34
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   35
Papio_anubis_76   (Olive baboon)   33
Macaca_mulatta_76_1   (Rhesus monkey)   47
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   78
Otolemur_garnettii_76_3   (Small-eared galago)   39
Microcebus_murinus_76_1   (Gray mouse lemur)   29
Rattus_norvegicus_76_5.0   (Norway rat)   34
Mus_musculus_76_38   (House mouse)   42
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   27
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   41
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   33
Cavia_porcellus_76_3   (Domestic guinea pig)   33
Oryctolagus_cuniculus_76_2   (Rabbit)   34
Ochotona_princeps_76   (American pika)   24
Tupaia_belangeri_76   (Northern tree shrew)   23
Sus_scrofa_76_10.2   (Pig)   38
Bos_taurus_76_3.1   (Cattle)   42
Ovis_aries_76_3.1   (Sheep)   41
Vicugna_pacos_76_1   (Alpaca)   19
Tursiops_truncatus_76_1   (Bottlenose dolphin)   28
Mustela_putorius_furo_76_1.0   (Domestic ferret)   30
Ailuropoda_melanoleuca_76_1   (Giant panda)   36
Canis_familiaris_76_3.1   (Dog)   42
Felis_catus_76_6.2   (Domestic cat)   33
Equus_caballus_76_2   (Horse)   34
Myotis_lucifugus_76_2.0   (Little brown bat)   32
Pteropus_vampyrus_76_1   (Large flying fox)   32
Sorex_araneus_76_1   (European shrew)   14
Erinaceus_europaeus_76   (Western European hedgehog)   24
Procavia_capensis_76_1   (Cape rock hyrax)   26
Loxodonta_africana_76_3   (African savanna elephant)   47
Echinops_telfairi_76   (Small Madagascar hedgehog)   25
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   18
Macropus_eugenii_76_1.0   (Tammar wallaby)   26
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   41
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   38
Ornithorhynchus_anatinus_76_5   (Platypus)   35
Saccoglossus_kowalevskii_v3.0 111
Petromyzon_marinus_76_7.0   (Sea lamprey)   20
Meleagris_gallopavo_76_2   (Turkey)   39
Gallus_gallus_76_4   (Chicken)   35
Anas_platyrhynchos_76_1.0   (Mallard)   30
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   34
Ficedula_albicollis_76_1.0   (Collared flycatcher)   31
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   45
Anolis_carolinensis_76_2.0   (Green anole)   35
Xenopus_laevis_   (African clawed frog)   33
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   44
Latimeria_chalumnae_76_1   (Coelacanth)   44
Lepisosteus_oculatus_76   (Spotted gar)   43
Gadus_morhua_76_1   (Atlantic cod)   42
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   77
Takifugu_rubripes_76_4   (Torafugu)   309
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   78
Oryzias_latipes_76_1   (Japanese medaka)   67
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   47
Poecilia_formosa_76   (Amazon molly)   42
Oreochromis_niloticus_76_1.0   (Nile tilapia)   67
Astyanax_mexicanus_76   (Mexican tetra)   40
Danio_rerio_76_9   (Zebrafish)   69
Oikopleura_dioica 19
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   33
Ciona_intestinalis_76   (Vase tunicate)   13
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   37
Adineta_vaga 79
Octopus_bimaculoides_280 58
Crassostrea_gigas_22   (Pacific oyster)   98
Lottia_gigantea_   (Owl limpet)   73
Helobdella_robusta_ 57
Capitella_sp._I_ 101
Danaus_plexippus_OGS1.0   (Monarch butterfly)   15
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   7
Nasonia_vitripennis_   (Jewel wasp)   10
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   55
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   12
Linepithema_humile_v1.1   (Argentine ant)   12
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   12
Solenopsis_invicta_v.2.2.3   (Red fire ant)   8
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   12
Atta_cephalotes_v1.1 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9
Lucilia_cuprina   (Australian sheep blowfly)   8
Drosophila_grimshawi_1.3 9
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 8
Drosophila_persimilis_1.3 10
Drosophila_suzukii 7
Drosophila_yakuba_1.3 9
Drosophila_simulans_1.3 12
Drosophila_sechellia_1.3 11
Drosophila_melanogaster_76_5   (Fruit fly)   23
Drosophila_erecta_1.3 10
Drosophila_ananassae_1.3 7
Drosophila_virilis_1.2 9
Drosophila_mojavensis_1.3 8
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   18
Anopheles_darlingi_22   (American malaria mosquito)   8
Anopheles_gambiae_49_3j   (African malaria mosquito)   15
Tribolium_castaneum_3.0   (Red flour beetle)   17
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   10
Acyrthosiphon_pisum_   (Pea aphid)   14
Rhodnius_prolixus_22 10
Daphnia_pulex_   (Common water flea)   17
Strigamia_maritima_22 30
Sarcoptes_scabiei 7
Tetranychus_urticae_   (Two-spotted spider mite)   15
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   19
Pristionchus_pacificus_ 68
Meloidogyne_incognita_   (Southern root-knot nematode)   9
Meloidogyne_hapla_ 6
Onchocerca_volvulus_22 27
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   27
Caenorhabditis_japonica_ 32
Caenorhabditis_brenneri_ 67
Caenorhabditis_remanei_ 46
Caenorhabditis_elegans_76_235   (Roundworm)   79
Caenorhabditis_briggsae_2 49
Trichinella_spiralis_22 12
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 7
Echinococcus_granulosus_ 7
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 3
Acropora_digitifera_v1.0 27
Nematostella_vectensis_1.0   (Starlet sea anemone)   89
Hydra_vulgaris 12
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Chlorella_variabilis_sp._NC64A_ 2
Chlamydomonas_reinhardtii_4.0 1
Micromonas_sp._RCC299_ 1
Porphyridium_purpureum_02_2012 0
Bigelowiella_natans_CCMP2755_22 1
Cyanophora_paradoxa_ 0
Aureococcus_anophagefferens_ 2
Fragilariopsis_cylindrus 1
Symbiodinium_minutum_clade_B1_v1.2 2
Emiliania_huxleyi_CCMP1516_ 7
Synechococcus_sp._PCC_6312 1
Cyanothece_sp._PCC_8802 1
Gloeobacter_violaceus_PCC_7421 1
Haliscomenobacter_hydrossis_DSM_1100 1
Planctomyces_brasiliensis_DSM_5305 0
Coraliomargarita_akajimensis_DSM_45221 1
Magnetospirillum_magneticum_AMB-1 0
Azospirillum_brasilense_Sp245 1
Nitrosococcus_watsonii_C-113 1
Dickeya_dadantii_Ech703 1
Dickeya_zeae_Ech1591 1
Francisella_sp._TX077308 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1
Francisella_tularensis_subsp._tularensis_WY96-3418 1
Francisella_cf._novicida_3523 1
Francisella_novicida_U112 1
Methanoregula_boonei_6A8 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   40
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   21
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   38
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   69
Chroococcidiopsis_thermalis_PCC_7203 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Saccharothrix_espanaensis_DSM_44229 0
Vibrio_nigripulchritudo_VibrioScope 1
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Francisella_tularensis_subsp._mediasiatica_FSC147 1
Francisella_tularensis_subsp._tularensis_TIGB03 1
Francisella_tularensis_subsp._tularensis_TI0902 1
Francisella_tularensis_subsp._tularensis_NE061598 1
Francisella_tularensis_subsp._tularensis_FSC198 1
Francisella_tularensis_subsp._tularensis_SCHU_S4 1
Francisella_cf._novicida_Fx1 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   32
Pan_troglodytes_69_2.1.4   (Chimpanzee)   31
Gorilla_gorilla_69_3.1   (Western gorilla)   32
Pongo_abelii_69_2   (Sumatran orangutan)   32
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   31
Macaca_mulatta_69_1   (Rhesus monkey)   32
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   34
Otolemur_garnettii_69_3   (Small-eared galago)   36
Microcebus_murinus_69_1   (Gray mouse lemur)   29
Rattus_norvegicus_69_3.4   (Norway rat)   29
Mus_musculus_69_38   (House mouse)   31
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   27
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   41
Cavia_porcellus_69_3   (Domestic guinea pig)   31
Oryctolagus_cuniculus_69_2   (Rabbit)   33
Ochotona_princeps_69   (American pika)   24
Tupaia_belangeri_69   (Northern tree shrew)   23
Sus_scrofa_69_10.2   (Pig)   35
Bos_taurus_69_3.1   (Cattle)   37
Vicugna_pacos_69_1   (Alpaca)   19
Tursiops_truncatus_69_1   (Bottlenose dolphin)   28
Mustela_putorius_furo_69_1.0   (Domestic ferret)   29
Ailuropoda_melanoleuca_69_1   (Giant panda)   33
Canis_familiaris_69_3.1   (Dog)   30
Felis_catus_69   (Domestic cat)   24
Equus_caballus_69_2   (Horse)   33
Myotis_lucifugus_69_2.0   (Little brown bat)   30
Pteropus_vampyrus_69_1   (Large flying fox)   32
Sorex_araneus_69_1   (European shrew)   14
Erinaceus_europaeus_69   (Western European hedgehog)   24
Procavia_capensis_69_1   (Cape rock hyrax)   26
Loxodonta_africana_69_3   (African savanna elephant)   36
Echinops_telfairi_69   (Small Madagascar hedgehog)   25
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   24
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   18
Macropus_eugenii_69_1.0   (Tammar wallaby)   26
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   33
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   36
Ornithorhynchus_anatinus_69_5   (Platypus)   31
Petromyzon_marinus_69_7.0   (Sea lamprey)   19
Meleagris_gallopavo_69_2   (Turkey)   32
Gallus_gallus_69_2   (Chicken)   36
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   34
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   34
Anolis_carolinensis_69_2.0   (Green anole)   34
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   41
Latimeria_chalumnae_69_1   (Coelacanth)   37
Gadus_morhua_69_1   (Atlantic cod)   40
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   49
Takifugu_rubripes_69_4   (Torafugu)   32
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   48
Oryzias_latipes_69_1   (Japanese medaka)   45
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   46
Oreochromis_niloticus_69_1.0   (Nile tilapia)   45
Danio_rerio_69_9   (Zebrafish)   48
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_69   (Vase tunicate)   12
Drosophila_melanogaster_69_5   (Fruit fly)   9
Caenorhabditis_elegans_69_215   (Roundworm)   55

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   94
Homo_sapiens__(NCBI_version)   (Human)   58
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   29
Loa_loa_v3.3_(Request)   (Eye worm)   25
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   17
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   11
NCBI_plasmid_sequences_(Plasmids) 1
Protein_Data_Bank_(all_PDB_sequenc) 718
STRING_v9.0.5_(STRING) 1664
Uniprot_2018_03_genome 40149
NCBI_2017_08_genome 18124
TargetDB__(Targets) 45

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