SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - 63748,57903,_gap_

Domain combinations for 63748,57903,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63748 - Tudor/PWWP/MBT
57903 - FYVE/PHD zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   0
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Amphimedon_queenslandica 0
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Vitis_vinifera_   (Wine grape)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Oryza_glaberrima   (African rice)   0
Physcomitrella_patens 0
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_v199 0
Micromonas_sp._RCC299_ 0
Porphyridium_purpureum_02_2012 1
Ectocarpus_siliculosus 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
STRING_v9.0.5_(STRING) 2
NCBI_2017_08_genome 28
Uniprot_2018_03_genome 126
TargetDB__(Targets) 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.