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Domain combinations for 63748,_gap_,55271,53150,_gap_,48334,52540 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63748 - Tudor/PWWP/MBT
55271 - DNA repair protein MutS, domain I
53150 - DNA repair protein MutS, domain II
48334 - DNA repair protein MutS, domain III
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Rattus_norvegicus_76_5.0   (Norway rat)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Saccoglossus_kowalevskii_v3.0 0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Asterochloris_sp._Cgr/DA1pho_v1.0 1

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Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 648
NCBI_2017_08_genome 63

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