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  Home > SCOP hierarchy > Domain combination - 63817,_gap_

Domain combinations for 63817,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63817 - Sortase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Slackia_heliotrinireducens_DSM_20476 1
Coriobacterium_glomerans_PW2 0
Ilumatobacter_coccineus 0
Acidimicrobium_ferrooxidans_DSM_10331 2
Catenulispora_acidiphila_DSM_44928 1
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 0
Amycolatopsis_mediterranei_U32 2
Nocardioides_sp._JS614 0
Propionibacterium_propionicum_F0230a 0
Corynebacterium_pseudotuberculosis_316 1
Microbacterium_testaceum_StLB037 1
[Cellvibrio]_gilvus_ATCC_13127 1
Gardnerella_vaginalis_409-05 0
Bifidobacterium_longum_subsp._longum_JDM301 0
Bifidobacterium_animalis_subsp._lactis_Bl-04 0
Bifidobacterium_dentium_Bd1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 0
Bifidobacterium_bifidum_S17 0
Bifidobacterium_adolescentis_ATCC_15703 0
Arcanobacterium_haemolyticum_DSM_20595 0
Actinomyces_sp._F0330 0
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Eubacterium_siraeum 0
Ethanoligenens_harbinense_YUAN-3 1
Ruminococcus_bromii 1
Ruminococcus_albus_7 0
Sulfobacillus_acidophilus_DSM_10332 3
Oscillibacter_valericigenes_Sjm18-20 0
Clostridium_phytofermentans_ISDg 0
[Ruminococcus]_torques 2
Butyrivibrio_fibrisolvens 1
Enterococcus_faecium_Aus0004 0
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_ruminis_ATCC_27782 0
Lactococcus_lactis_subsp._cremoris_MG1363 0
Streptococcus_gallolyticus_UCN34 0
Streptococcus_pasteurianus_ATCC_43144 0
Streptococcus_infantarius_subsp._infantarius_CJ18 0
Streptococcus_macedonicus_ACA-DC_198 0
Streptococcus_oralis_Uo5 2
Exiguobacterium_sp._MH3 1
Exiguobacterium_sp._AT1b 1
Exiguobacterium_sibiricum_255-15 1
Halobacillus_halophilus_DSM_2266 0
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1

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Strains
Genome     Number
Adlercreutzia_equolifaciens_DSM_19450 1
Frankia_sp._EuI1c 0
Saccharothrix_espanaensis_DSM_44229 0
Amycolatopsis_mediterranei_RB 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_orientalis_HCCB10007 1
Corynebacterium_pseudotuberculosis_P54B96 0
Gardnerella_vaginalis_HMP9231 0
Gardnerella_vaginalis_ATCC_14019 0
Bifidobacterium_longum_NCC2705 0
Bifidobacterium_longum_DJO10A 0
Bifidobacterium_longum_subsp._infantis_157F 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_F8 0
Bifidobacterium_longum_subsp._longum_JCM_1217 2
Bifidobacterium_thermophilum_RBL67 0
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 0
Bifidobacterium_animalis_subsp._lactis_Bl12 0
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 0
Bifidobacterium_animalis_subsp._lactis_BLC1 0
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 0
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 0
Bifidobacterium_animalis_subsp._lactis_DSM_10140 0
Bifidobacterium_animalis_subsp._lactis_BB-12 0
Bifidobacterium_animalis_subsp._lactis_AD011 0
Bifidobacterium_breve_UCC2003 0
Bifidobacterium_asteroides_PRL2011 0
Bifidobacterium_bifidum_PRL2010 0
Bifidobacterium_bifidum_BGN4 0
Actinomyces_viscosus_C505 0
Eubacterium_siraeum_V10Sc8a 0
Ruminococcus_champanellensis_18P13 0
Sulfobacillus_acidophilus_TPY 3
Coprococcus_catus_GD/7 1
Enterococcus_casseliflavus_EC20 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Enterococcus_faecium_DO 0
Leuconostoc_carnosum_JB16 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 1
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 0
Lactobacillus_casei_BL23 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_KF147 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_A76 1
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 0
Streptococcus_dysgalactiae_subsp._equisimilis_167 0
Streptococcus_pneumoniae_A026 1
Streptococcus_pneumoniae_ST556 2
Streptococcus_pneumoniae_INV104 1
Streptococcus_pneumoniae_AP200 1
Streptococcus_pneumoniae_TCH8431/19A 2
Streptococcus_pneumoniae_Taiwan19F-14 2
Exiguobacterium_antarcticum_B7 1
Methanobacterium_sp._SWAN-1 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
Uniprot_2018_03_genome 1605
NCBI_2017_08_genome 2868
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 12

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.