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Domain combinations for 69318,_gap_,69179,69179,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

69318 - Integrin alpha N-terminal domain
69179 - Integrin domains
69179 - Integrin domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Vicugna_pacos_76_1   (Alpaca)   0
Sorex_araneus_76_1   (European shrew)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   1
Amphimedon_queenslandica 1

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Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Vicugna_pacos_69_1   (Alpaca)   0
Felis_catus_69   (Domestic cat)   1
Sorex_araneus_69_1   (European shrew)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 7
NCBI_2017_08_genome 39
Uniprot_2018_03_genome 923

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