SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - 74650,51445,51011,_gap_

Domain combinations for 74650,51445,51011,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

74650 - Galactose mutarotase-like
51445 - (Trans)glycosidases
51011 - Glycosyl hydrolase domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   5
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   3
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_76_3   (Small-eared galago)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   4
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   3
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   3
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   4
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   5
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 8
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   2
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   4
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5
Takifugu_rubripes_76_4   (Torafugu)   7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   4
Oryzias_latipes_76_1   (Japanese medaka)   3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   4
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   3
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 17
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 4
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   5
Drosophila_erecta_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 2
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 6
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   1
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 2
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 3
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 3
Rhizomucor_miehei_CAU432_ 5
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 2
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 7
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   4
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 3
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 4
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 5
Trametes_versicolor_v1.0 4
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 4
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 3
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 2
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 3
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 4
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 2
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 6
Aspergillus_versicolor_v1.0 6
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 3
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 4
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   4
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   20
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 9
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   4
Thellungiella_halophila_v173 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   13
Phaseolus_vulgaris_v186   (French bean)   5
Glycine_max_v109   (Soybean)   10
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   7
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   6
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   4
Solanum_tuberosum_   (Potato)   4
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 6
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   4
Aegilops_tauschii_22 6
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 9
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 6
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   4
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 3
Physcomitrella_patens 14
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 2
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 0
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 1
Paramecium_tetraurelia_ 7
Tetrahymena_thermophila_SB210_1_ 7
Ichthyophthirius_multifiliis_strain_G5_ 4
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 5
Trichomonas_vaginalis_ 10
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 3
Microcoleus_sp._PCC_7113 2
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Gloeocapsa_sp._PCC_7428 1
Gloeobacter_violaceus_PCC_7421 2
Rivularia_sp._PCC_7116 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 2
Nostoc_sp._PCC_7524 1
Mesoplasma_florum_L1 1
Mycoplasma_leachii_99/014/6 1
Mycoplasma_mycoides_subsp._capri_LC_str._95010 1
Mycoplasma_capricolum_subsp._capricolum_ATCC_27343 1
Mycoplasma_putrefaciens_KS1 1
Rubrobacter_xylanophilus_DSM_9941 2
Thermobispora_bispora_DSM_43833 1
Catenulispora_acidiphila_DSM_44928 0
Thermobifida_fusca_YX 1
Streptosporangium_roseum_DSM_43021 1
Streptomyces_coelicolor_A3(2) 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Saccharopolyspora_erythraea_NRRL_2338 1
Kribbella_flavida_DSM_17836 0
Nocardioides_sp._JS614 1
Propionibacterium_acnes_SK137 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Beutenbergia_cavernae_DSM_12333 1
Intrasporangium_calvum_DSM_43043 1
Cellulomonas_flavigena_DSM_20109 1
Arthrobacter_aurescens_TC1 0
Arthrobacter_sp._Rue61a 0
Bifidobacterium_dentium_Bd1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Truepera_radiovictrix_DSM_17093 1
Deinococcus_maricopensis_DSM_21211 1
Oceanithermus_profundus_DSM_14977 1
Marinithermus_hydrothermalis_DSM_14884 1
Meiothermus_ruber_DSM_1279 1
Thermus_scotoductus_SA-01 1
Thermus_thermophilus_HB27 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Clostridium_cellulolyticum_H10 1
Ethanoligenens_harbinense_YUAN-3 1
Faecalibacterium_prausnitzii 1
Ruminococcus_sp. 2
Sulfobacillus_acidophilus_DSM_10332 1
Candidatus_Desulforudis_audaxviator_MP104C 1
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 1
[Ruminococcus]_obeum 2
[Ruminococcus]_torques 1
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 1
Coprococcus_sp._ART55/1 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1
Clostridium_novyi_NT 1
Clostridium_beijerinckii_NCIMB_8052 3
Clostridium_perfringens_ATCC_13124 2
Clostridium_cellulovorans_743B 1
Clostridium_acetobutylicum_ATCC_824 2
Mahella_australiensis_50-1_BON 2
Thermoanaerobacter_tengcongensis_MB4 2
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 2
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_sp._X514 1
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Halothermothrix_orenii_H_168 2
Halanaerobium_praevalens_DSM_2228 1
Lactobacillus_casei_ATCC_334 0
Lactobacillus_kefiranofaciens_ZW3 1
Lactobacillus_crispatus_ST1 1
Lactobacillus_rhamnosus_Lc_705 0
Lactobacillus_johnsonii_FI9785 1
Lactobacillus_amylovorus_GRL1118 1
Lactobacillus_reuteri_DSM_20016 1
Lactobacillus_gasseri_ATCC_33323 1
Lactobacillus_plantarum_JDM1 1
Lactobacillus_helveticus_DPC_4571 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 0
Lactobacillus_buchneri_NRRL_B-30929 1
Lactobacillus_buchneri 1
Lactobacillus_brevis_ATCC_367 1
Lactobacillus_acidophilus_30SC 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Paenibacillus_mucilaginosus_3016 2
Listeria_innocua_Clip11262 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1
Anoxybacillus_flavithermus_WK1 1
Geobacillus_sp._WCH70 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_megaterium_DSM_319 1
Melioribacter_roseus_P3M 1
Haliscomenobacter_hydrossis_DSM_1100 2
Niastella_koreensis_GR20-10 4
Chitinophaga_pinensis_DSM_2588 1
Rhodothermus_marinus_DSM_4252 2
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 2
Marivirga_tractuosa_DSM_4126 2
Dyadobacter_fermentans_DSM_18053 1
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 1
Parabacteroides_distasonis_ATCC_8503 0
Paludibacter_propionicigenes_WB4 4
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_ruminicola_23 1
Bacteroides_salanitronis_DSM_18170 2
Bacteroides_helcogenes_P_36-108 0
Bacteroides_vulgatus_ATCC_8482 2
Bacteroides_thetaiotaomicron_VPI-5482 4
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 4
Solitalea_canadensis_DSM_3403 1
Pedobacter_heparinus_DSM_2366 2
Sphingobacterium_sp._21 2
Zunongwangia_profunda_SM-A87 3
Krokinobacter_sp._4H-3-7-5 1
Gramella_forsetii_KT0803 1
Lacinutrix_sp._5H-3-7-4 1
Maribacter_sp._HTCC2170 1
Robiginitalea_biformata_HTCC2501 1
Zobellia_galactanivorans 2
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 1
Polaribacter_sp._MED152 2
Ornithobacterium_rhinotracheale_DSM_15997 0
Capnocytophaga_canimorsus_Cc5 0
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_johnsoniae_UW101 3
Opitutus_terrae_PB90-1 0
Akkermansia_muciniphila_ATCC_BAA-835 1
Spirochaeta_smaragdinae_DSM_11293 1
Sphaerochaeta_pleomorpha_str._Grapes 1
Sphaerochaeta_globus_str._Buddy 2
Spirochaeta_caldaria_DSM_7334 2
Treponema_succinifaciens_DSM_2489 1
Spirochaeta_thermophila_DSM_6192 1
Marinitoga_piezophila_KA3 1
Petrotoga_mobilis_SJ95 1
Mesotoga_prima_MesG1.Ag.4.2 1
Kosmotoga_olearia_TBF_19.5.1 2
Fervidobacterium_pennivorans_DSM_9078 1
Fervidobacterium_nodosum_Rt17-B1 1
Thermosipho_melanesiensis_BI429 1
Thermosipho_africanus_TCF52B 1
Dictyoglomus_turgidum_DSM_6724 3
Dictyoglomus_thermophilum_H-6-12 2
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 3
Granulicella_mallensis_MP5ACTX8 4
Candidatus_Koribacter_versatilis_Ellin345 3
Terriglobus_saanensis_SP1PR4 3
Terriglobus_roseus_DSM_18391 1
Acidobacterium_capsulatum_ATCC_51196 3
Sorangium_cellulosum_'So_ce_56' 1
Stigmatella_aurantiaca_DW4/3-1 4
Corallococcus_coralloides_DSM_2259 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_phymatum_STM815 1
Ralstonia_pickettii_12D 1
Burkholderia_sp._RPE64 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Collimonas_fungivorans_Ter331 1
Herbaspirillum_seropedicae_SmR1 1
Pusillimonas_sp._T7-7 1
Taylorella_asinigenitalis_MCE3 1
Taylorella_equigenitalis_MCE9 1
Bordetella_petrii_DSM_12804 1
Bordetella_avium_197N 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 1
Bordetella_bronchiseptica_RB50 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Asticcacaulis_excentricus_CB_48 1
Caulobacter_sp._K31 0
Caulobacter_segnis_ATCC_21756 2
Pseudovibrio_sp._FO-BEG1 1
Ruegeria_sp._TM1040 1
Azospirillum_sp._B510 1
Polymorphum_gilvum_SL003B-26A1 1
Rhodomicrobium_vannielii_ATCC_17100 1
Bradyrhizobium_sp._ORS_278 1
Cellvibrio_japonicus_Ueda107 2
Aggregatibacter_actinomycetemcomitans_D7S-1 1
Gallibacterium_anatis_UMN179 1
Actinobacillus_succinogenes_130Z 1
Tolumonas_auensis_DSM_9187 1
Psychromonas_ingrahamii_37 0
Ferrimonas_balearica_DSM_9799 1
Shewanella_amazonensis_SB2B 0
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 1
Glaciecola_nitratireducens_FR1064 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Marinomonas_sp._MWYL1 1
Halomonas_elongata_DSM_2581 1
Rhodanobacter_denitrificans 1
Stenotrophomonas_maltophilia_K279a 0
Allochromatium_vinosum_DSM_180 1
Nitrosococcus_halophilus_Nc4 1
Rahnella_sp._Y9602 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Yersinia_pseudotuberculosis_IP_31758 1
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Serratia_sp._AS12 1
Serratia_sp._ATCC_39006 1
Serratia_plymuthica_AS9 1
Serratia_proteamaculans_568 1
Dickeya_dadantii_Ech703 1
Dickeya_zeae_Ech1591 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 1
Pectobacterium_atrosepticum_SCRI1043 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Pantoea_vagans_C9-1 1
Pantoea_ananatis_LMG_20103 1
Erwinia_billingiae_Eb661 1
Escherichia_blattae_DSM_4481 1
Cronobacter_turicensis_z3032 1
Cronobacter_sakazakii_ES15 1
Enterobacteriaceae_bacterium_strain_FGI_57 1
Shigella_sonnei_Ss046 1
Salmonella_bongori_NCTC_12419 1
Klebsiella_oxytoca_E718 1
Klebsiella_variicola_At-22 1
Klebsiella_pneumoniae_NTUH-K2044 1
Enterobacter_aerogenes_KCTC_2190 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1
Enterobacter_sp._R4-368 1
Enterobacter_sp._638 1
Enterobacter_asburiae_LF7a 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1
Citrobacter_koseri_ATCC_BAA-895 1
Francisella_sp._TX077308 1
Francisella_cf._novicida_3523 1
Acidilobus_saccharovorans_345-15 1
Ignisphaera_aggregans_DSM_17230 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 2
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 2
Sulfolobus_solfataricus_P2 2
Sulfolobus_acidocaldarius_DSM_639 1
Caldivirga_maquilingensis_IC-167 3
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Thermoproteus_uzoniensis_768-20 2
Thermoproteus_tenax_Kra_1 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Picrophilus_torridus_DSM_9790 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Haloquadratum_walsbyi_DSM_16790 1
Haloferax_mediterranei_ATCC_33500 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4
Trypanosoma_brucei_Lister_427_v4.1 1
Chroococcidiopsis_thermalis_PCC_7203 2
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 2
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7424 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Cylindrospermum_stagnale_PCC_7417 1
Mycoplasma_leachii_PG50 1
Mycoplasma_mycoides_subsp._mycoides_SC_str._Gladysdale 1
Mycoplasma_mycoides_subsp._mycoides_SC_str._PG1 1
Mycoplasma_putrefaciens_Mput9231 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Amycolatopsis_orientalis_HCCB10007 1
Propionibacterium_acnes_ATCC_11828 1
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_KPA171202 1
Actinoplanes_friuliensis_DSM_7358 0
Nocardia_brasiliensis_ATCC_700358 1
Bifidobacterium_asteroides_PRL2011 1
Deinococcus_peraridilitoris_DSM_19664 1
Thermus_thermophilus_HB8 1
Faecalibacterium_prausnitzii_L2-6 1
Ruminococcus_champanellensis_18P13 1
Roseburia_intestinalis_XB6B4 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 3
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 2
Clostridium_pasteurianum_BC1 1
Clostridium_botulinum_BKT015925 1
Clostridium_acetobutylicum_DSM_1731 2
Clostridium_acetobutylicum_EA_2018 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1
Thermoanaerobacter_sp._X513 1
Halobacteroides_halobius_DSM_5150 1
Enterococcus_faecalis_OG1RF 0
Enterococcus_faecalis_V583 0
Lactobacillus_rhamnosus_LOCK908 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_rhamnosus_ATCC_8530 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_johnsonii_N6.2 1
Lactobacillus_johnsonii_DPC_6026 1
Lactobacillus_johnsonii_NCC_533 1
Lactobacillus_amylovorus_GRL_1112 1
Lactobacillus_reuteri_TD1 1
Lactobacillus_reuteri_I5007 1
Lactobacillus_reuteri_JCM_1112 1
Lactobacillus_reuteri_SD2112 1
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Lactobacillus_plantarum_WCFS1 1
Lactobacillus_helveticus_R0052 1
Lactobacillus_helveticus_H10 1
Lactobacillus_helveticus_CNRZ32 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 0
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 0
Lactobacillus_brevis_KB290 1
Lactobacillus_acidophilus_La-14 1
Lactobacillus_acidophilus_NCFM 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Thermobacillus_composti_KWC4 0
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 2
Listeria_monocytogenes_EGD_sequence 1
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Listeria_monocytogenes_serotype_4b_str._LL195 1
Listeria_monocytogenes_07PF0776 1
Listeria_monocytogenes_M7 1
Listeria_monocytogenes_J1-220 1
Listeria_monocytogenes_J1816 1
Listeria_monocytogenes_SLCC2376 1
Listeria_monocytogenes_SLCC5850 1
Listeria_monocytogenes_ATCC_19117 1
Listeria_monocytogenes_L312 1
Listeria_monocytogenes_SLCC2479 1
Listeria_monocytogenes_SLCC7179 1
Listeria_monocytogenes_SLCC2540 1
Listeria_monocytogenes_SLCC2378 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 1
Listeria_monocytogenes_08-5578 1
Listeria_monocytogenes_08-5923 1
Listeria_monocytogenes_L99 1
Listeria_monocytogenes_HCC23 1
Listeria_monocytogenes_10403S 1
Listeria_monocytogenes_J0161 1
Listeria_monocytogenes_Finland_1998 1
Listeria_monocytogenes_FSL_R2-561 1
Listeria_monocytogenes_serotype_4b_str._F2365 1
Listeria_monocytogenes_EGD-e 1
Geobacillus_sp._Y4.1MC1 1
Bacillus_licheniformis_9945A 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_infantis_NRRL_B-14911 3
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Rhodothermus_marinus_SG0.5JP17-172 2
Echinicola_vietnamensis_DSM_17526 2
Prevotella_dentalis_DSM_3688 1
Bacteroides_xylanisolvens_XB1A 3
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 1
Brachyspira_pilosicoli_B2904 1
Spirochaeta_thermophila_DSM_6578 2
Sorangium_cellulosum_So0157-2 3
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Taylorella_asinigenitalis_14/45 1
Taylorella_equigenitalis_14/56 1
Taylorella_equigenitalis_ATCC_35865 1
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Mannheimia_succiniciproducens_MBEL55E 1
Aggregatibacter_actinomycetemcomitans_ANH9381 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1
Haemophilus_influenzae_KR494 1
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alteromonas_macleodii_ATCC_27126 1
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Thioflavicoccus_mobilis_8321 1
Rahnella_aquatilis_HX2 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1
Serratia_sp._AS13 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 1
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1
Pantoea_ananatis_LMG_5342 1
Pantoea_ananatis_PA13 1
Pantoea_ananatis_AJ13355 1
Cronobacter_sakazakii_CMCC_45402 1
Cronobacter_sakazakii_SP291 1
Cronobacter_sakazakii_ATCC_BAA-894 1
Raoultella_ornithinolytica_B6 1
Shigella_sonnei_53G 1
Salmonella_bongori_N268-08 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Klebsiella_oxytoca_KCTC_1686 1
Klebsiella_pneumoniae_JM45 1
Klebsiella_pneumoniae_CG43 1
Klebsiella_pneumoniae_KCTC_2242 1
Klebsiella_pneumoniae_342 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1
Enterobacter_aerogenes_EA1509E 1
Escherichia_coli_UMN026 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_B_str._REL606 1
Enterobacter_cloacae_SCF1 1
Enterobacter_cloacae_EcWSU1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1
Francisella_cf._novicida_Fx1 1
Caldisphaera_lagunensis_DSM_15908 1
Sulfolobus_islandicus_LAL14/1 2
Sulfolobus_islandicus_REY15A 2
Sulfolobus_islandicus_HVE10/4 2
Sulfolobus_islandicus_Y.G.57.14 2
Sulfolobus_islandicus_L.S.2.15 2
Sulfolobus_islandicus_M.16.27 2
Sulfolobus_islandicus_M.14.25 2
Sulfolobus_islandicus_M.16.4 2
Sulfolobus_islandicus_L.D.8.5 2
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Haloquadratum_walsbyi_C23 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   2
Microcebus_murinus_69_1   (Gray mouse lemur)   4
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   3
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   2
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   3
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   5
Homo_sapiens__(NCBI_version)   (Human)   3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Loa_loa_v3.3_(Request)   (Eye worm)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 4
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 10
Protein_Data_Bank_(all_PDB_sequenc) 42
STRING_v9.0.5_(STRING) 483
Uniprot_2018_03_genome 89270
NCBI_viral_sequences_(Viral) 1
NCBI_2017_08_genome 19933
Protozoadb_2010_08_(Protozoadb) 39
TargetDB__(Targets) 33

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.