SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - 81296,54001,49309,_gap_

Domain combinations for 81296,54001,49309,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81296 - E set domains
54001 - Cysteine proteinases
49309 - Transglutaminase, two C-terminal domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Equus_caballus_76_2   (Horse)   1
Saccoglossus_kowalevskii_v3.0 0
Lepisosteus_oculatus_76   (Spotted gar)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Octopus_bimaculoides_280 0
Anopheles_darlingi_22   (American malaria mosquito)   0
Acropora_digitifera_v1.0 0

Longest transcript per gene
Genome     Number
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Equus_caballus_69_2   (Horse)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 130
NCBI_2017_08_genome 15

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.