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  Home > SCOP hierarchy > Domain combination - 81296,81296,51445,_gap_,51011

Domain combinations for 81296,81296,51445,_gap_,51011 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81296 - E set domains
81296 - E set domains
51445 - (Trans)glycosidases
51011 - Glycosyl hydrolase domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Sphaeroforma_arctica_JP610_ 0
Selaginella_moellendorffii_ 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 0
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   1
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 0
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 0
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 0
Symbiodinium_minutum_clade_B1_v1.2 0
Thermobaculum_terrenum_ATCC_BAA-798 1
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_sp._CC9311 1
Synechococcus_elongatus_PCC_7942 1
Prochlorococcus_marinus_str._MIT_9515 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Thermobispora_bispora_DSM_43833 1
Nakamurella_multipartita_DSM_44233 1
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 0
Blastococcus_saxobsidens_DD2 0
Kineococcus_radiotolerans_SRS30216 1
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 0
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 0
Pseudonocardia_dioxanivorans_CB1190 0
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 0
Microlunatus_phosphovorus_NM-1 0
Salinispora_tropica_CNB-440 0
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Amycolicicoccus_subflavus_DQS3-9A1 2
Mycobacterium_massiliense_str._GO_06 1
Mycobacterium_abscessus_ATCC_19977 1
Mycobacterium_sp._JLS 1
Mycobacterium_intracellulare_ATCC_13950 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_gilvum_PYR-GCK 1
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_ulcerans_0102 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_variabile_DSM_44702 0
Corynebacterium_pseudotuberculosis_316 1
Corynebacterium_diphtheriae_NCTC_13129 1
Sanguibacter_keddieii_DSM_10542 0
Kytococcus_sedentarius_DSM_20547 0
Microbacterium_testaceum_StLB037 1
Jonesia_denitrificans_DSM_20603 1
Intrasporangium_calvum_DSM_43043 0
Brachybacterium_faecium_DSM_4810 0
Isoptericola_variabilis_225 1
Xylanimonas_cellulosilytica_DSM_15894 1
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 1
[Cellvibrio]_gilvus_ATCC_13127 1
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_arilaitensis_Re117 1
Arthrobacter_sp._FB24 0
Micrococcus_luteus_NCTC_2665 1
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Mobiluncus_curtisii_ATCC_43063 1
Actinomyces_sp._F0330 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Herpetosiphon_aurantiacus_DSM_785 1
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Truepera_radiovictrix_DSM_17093 0
Deinococcus_deserti_VCD115 0
Deinococcus_maricopensis_DSM_21211 0
Deinococcus_radiodurans_R1 0
Meiothermus_silvanus_DSM_9946 0
Clostridium_thermocellum_ATCC_27405 1
butyrate-producing_bacterium_SS3/4 0
Clostridium_saccharolyticum_WM1 1
Coprococcus_sp._ART55/1 0
Candidatus_Protochlamydia_amoebophila_UWE25 1
Parachlamydia_acanthamoebae_UV-7 1
Chlamydophila_abortus_S26/3 1
Chlamydia_psittaci_01DC11 1
Isosphaera_pallida_ATCC_43644 0
Rhodopirellula_baltica_SH_1 1
Coraliomargarita_akajimensis_DSM_45221 1
Petrotoga_mobilis_SJ95 1
Granulicella_tundricola_MP5ACTX9 0
Candidatus_Koribacter_versatilis_Ellin345 0
Candidatus_Methylomirabilis_oxyfera 1
Acidithiobacillus_ferrivorans_SS3 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1
Desulfurivibrio_alkaliphilus_AHT2 1
Sorangium_cellulosum_'So_ce_56' 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Thauera_sp._MZ1T 1
Rubrivivax_gelatinosus_IL144 0
Cupriavidus_taiwanensis_LMG_19424 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_multivorans_ATCC_17616 1
Herbaspirillum_seropedicae_SmR1 0
Bordetella_petrii_DSM_12804 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Nitrosospira_multiformis_ATCC_25196 1
Nitrosomonas_sp._Is79A3 1
Sideroxydans_lithotrophicus_ES-1 1
Methylotenera_versatilis_301 1
Methylotenera_mobilis_JLW8 1
Methylovorus_sp._MP688 1
Methylovorus_glucosetrophus_SIP3-4 1
Methylobacillus_flagellatus_KT 1
Magnetococcus_marinus_MC-1 2
Novosphingobium_sp._PP1Y 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_sp._SYK-6 1
Sphingobium_japonicum_UT26S 1
Sphingobium_chlorophenolicum_L-1 1
Hirschia_baltica_ATCC_49814 1
Roseobacter_litoralis_Och_149 1
Roseobacter_denitrificans_OCh_114 1
Rhodobacter_sphaeroides_ATCC_17029 1
Rhodobacter_capsulatus_SB_1003 1
Paracoccus_denitrificans_PD1222 1
Rhodospirillum_photometricum_DSM_122 1
Tistrella_mobilis_KA081020-065 1
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 2
Rhodospirillum_rubrum_F11 1
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 0
Azospirillum_brasilense_Sp245 1
Gluconacetobacter_xylinus_NBRC_3288 1
Granulibacter_bethesdensis_CGDNIH1 1
Acidiphilium_cryptum_JF-5 1
Acetobacter_pasteurianus_IFO_3283-01 1
Starkeya_novella_DSM_506 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1
Rhizobium_etli_CIAT_652 2
Rhizobium_leguminosarum_bv._viciae_3841 1
Agrobacterium_tumefaciens_str._C58 1
Agrobacterium_radiobacter_K84 1
Agrobacterium_sp._H13-3 1
Mesorhizobium_sp._BNC1 1
Rhodomicrobium_vannielii_ATCC_17100 1
Methylocystis_sp._SC2 1
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 1
Vibrio_sp._Ex25 0
Vibrio_harveyi_ATCC_BAA-1116 0
Vibrio_parahaemolyticus_RIMD_2210633 0
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Vibrio_vulnificus_MO6-24/O 1
Vibrio_cholerae_O395 1
Photobacterium_profundum_SS9 1
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 1
Shewanella_baltica_OS185 1
Shewanella_amazonensis_SB2B 0
Shewanella_frigidimarina_NCIMB_400 1
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 0
Glaciecola_nitratireducens_FR1064 0
Alteromonas_sp._SN2 0
Hahella_chejuensis_KCTC_2396 0
Methylomonas_methanica_MC09 1
Methylococcus_capsulatus_str._Bath 1
Pseudoxanthomonas_suwonensis_11-1 0
Xanthomonas_campestris_pv._campestris_str._B100 1
Halothiobacillus_neapolitanus_c2 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Thioalkalivibrio_sp._K90mix 1
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 1
Nitrosococcus_halophilus_Nc4 1
Nitrosococcus_oceani_ATCC_19707 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 0
Pseudomonas_fulva_12-X 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Thiomicrospira_crunogena_XCL-2 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Cyanobium_gracile_PCC_6307 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._CC9902 1
Synechococcus_sp._RCC307 1
Synechococcus_sp._CC9605 1
Synechococcus_sp._WH_8102 1
Synechococcus_sp._WH_7803 1
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._NATL1A 1
Prochlorococcus_marinus_str._MIT_9301 1
Prochlorococcus_marinus_str._AS9601 1
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 1
Prochlorococcus_marinus_str._MIT_9215 1
Prochlorococcus_marinus_str._MIT_9211 1
Prochlorococcus_marinus_str._MIT_9313 1
Prochlorococcus_marinus_str._MIT_9312 1
Prochlorococcus_marinus_str._MIT_9303 1
Prochlorococcus_marinus_str._NATL2A 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 0
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Actinoplanes_friuliensis_DSM_7358 1
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 2
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_liflandii_128FXT 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_kansasii_ATCC_12478 1
Corynebacterium_ulcerans_BR-AD22 1
Corynebacterium_ulcerans_809 1
Corynebacterium_pseudotuberculosis_258 1
Corynebacterium_pseudotuberculosis_Cp162 1
Corynebacterium_pseudotuberculosis_P54B96 1
Corynebacterium_pseudotuberculosis_267 1
Corynebacterium_pseudotuberculosis_1/06-A 1
Corynebacterium_pseudotuberculosis_42/02-A 1
Corynebacterium_pseudotuberculosis_3/99-5 1
Corynebacterium_pseudotuberculosis_31 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1
Corynebacterium_pseudotuberculosis_PAT10 1
Corynebacterium_pseudotuberculosis_I19 1
Corynebacterium_pseudotuberculosis_FRC41 1
Corynebacterium_pseudotuberculosis_C231 1
Corynebacterium_pseudotuberculosis_1002 1
Corynebacterium_diphtheriae_BH8 1
Corynebacterium_diphtheriae_VA01 1
Corynebacterium_diphtheriae_HC04 1
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_HC02 1
Corynebacterium_diphtheriae_HC01 1
Corynebacterium_diphtheriae_241 1
Corynebacterium_diphtheriae_CDCE_8392 1
Corynebacterium_diphtheriae_PW8 1
Corynebacterium_diphtheriae_C7_(beta) 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_breve_UCC2003 1
Actinomyces_graevenitzii_C83_ 1
Actinomyces_odontolyticus_ATCC_17982 1
Actinomyces_viscosus_C505 1
Deinococcus_peraridilitoris_DSM_19664 0
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1
Halobacteroides_halobius_DSM_5150 1
Chlamydia_psittaci_01DC12 1
Chlamydia_psittaci_WC 1
Chlamydia_psittaci_M56 1
Chlamydia_psittaci_WS/RT/E30 1
Chlamydia_psittaci_VS225 1
Chlamydia_psittaci_MN 1
Chlamydia_psittaci_GR9 1
Chlamydia_psittaci_08DC60 1
Chlamydia_psittaci_02DC15 1
Chlamydia_psittaci_C19/98 1
Chlamydia_psittaci_NJ1 1
Chlamydia_psittaci_CP3 1
Chlamydophila_psittaci_RD1 1
Chlamydia_psittaci_Mat116 1
Chlamydophila_psittaci_6BC 1
Chlamydophila_psittaci_6BC 1
Singulisphaera_acidiphila_DSM_18658 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1
Desulfocapsa_sulfexigens_DSM_10523 1
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_multivorans_ATCC_17616 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Nitrosomonas_sp._AL212 1
Sulfuricella_denitrificans_skB26 1
Octadecabacter_antarcticus_307 1
Octadecabacter_arcticus_238 1
Rhodobacter_sphaeroides_KD131 1
Rhodobacter_sphaeroides_ATCC_17025 2
Magnetospirillum_gryphiswaldense_MSR-1_v2 1
Rhodospirillum_rubrum_ATCC_11170 1
Gluconobacter_oxydans_H24 1
Acetobacter_pasteurianus_386B 1
Acetobacter_pasteurianus_IFO_3283-12 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1
Acetobacter_pasteurianus_IFO_3283-32 1
Acetobacter_pasteurianus_IFO_3283-26 1
Acetobacter_pasteurianus_IFO_3283-22 1
Acetobacter_pasteurianus_IFO_3283-07 1
Acetobacter_pasteurianus_IFO_3283-03 1
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2
Vibrio_sp._EJY3 0
Vibrio_parahaemolyticus_BB22OP 0
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 0
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 1
Vibrio_vulnificus_CMCP6 1
Vibrio_vulnificus_YJ016 1
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Glaciecola_psychrophila_170 0
Xanthomonas_campestris_pv._raphani_756C 1
Thioflavicoccus_mobilis_8321 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_mendocina_NK-01 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 0
NCBI_plasmid_sequences_(Plasmids) 14
TargetDB__(Targets) 6
Protein_Data_Bank_(all_PDB_sequenc) 13
STRING_v9.0.5_(STRING) 167
Uniprot_2018_03_genome 57736
NCBI_2017_08_genome 16748

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.