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  Home > SCOP hierarchy > Domain combination - 81901,48452,48452,48452

Domain combinations for 81901,48452,48452,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81901 - HCP-like
48452 - TPR-like
48452 - TPR-like
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   1
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   1
Loxodonta_africana_76_3   (African savanna elephant)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Onchocerca_volvulus_22 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Trichoplax_adhaerens_ 1
Sphaerobolus_stellatus_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Laccaria_bicolor_S238N-H82_ 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Fusarium_graminearum_ 0
Fusarium_verticillioides_7600_ 0
Sclerotinia_sclerotiorum_ 0
Aspergillus_zonatus_v1.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Candida_dubliniensis_CD36_ 0
Pichia_stipitis_CBS_6054_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Trypanosoma_cruzi_strain_CL_Brener 0
Pythium_ultimum_v1.7-2 1
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 1
Melioribacter_roseus_P3M 0
Porphyromonas_asaccharolytica_DSM_20707 0
Bacteroides_salanitronis_DSM_18170 0
Sphingobacterium_sp._21 0
Maribacter_sp._HTCC2170 0
Croceibacter_atlanticus_HTCC2559 0
Desulfurispirillum_indicum_S5 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Sorangium_cellulosum_'So_ce_56' 0
Dechloromonas_aromatica_RCB 1
Marinobacter_aquaeolei_VT8 0
Hahella_chejuensis_KCTC_2396 0
Thioalkalivibrio_sp._K90mix 0
Nitrosococcus_halophilus_Nc4 1

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Strains
Genome     Number
Bacillus_megaterium_QM_B1551 0
Glaciecola_psychrophila_170 1
Escherichia_coli_NA114 0
Escherichia_coli_BW2952 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   1
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   1
Loxodonta_africana_69_3   (African savanna elephant)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Gallus_gallus_69_2   (Chicken)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 301
NCBI_2017_08_genome 54

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.