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  Home > SCOP hierarchy > Domain combination - 82199,_gap_

Domain combinations for 82199,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

82199 - SET domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   10
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7
Papio_anubis_76   (Olive baboon)   9
Macaca_mulatta_76_1   (Rhesus monkey)   16
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10
Otolemur_garnettii_76_3   (Small-eared galago)   8
Microcebus_murinus_76_1   (Gray mouse lemur)   5
Rattus_norvegicus_76_5.0   (Norway rat)   6
Mus_musculus_76_38   (House mouse)   12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   5
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   10
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_76_1   (Giant panda)   8
Canis_familiaris_76_3.1   (Dog)   8
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   6
Xenopus_laevis_   (African clawed frog)   9
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   6
Lepisosteus_oculatus_76   (Spotted gar)   6
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   19
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   4
Oryzias_latipes_76_1   (Japanese medaka)   4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   7
Danio_rerio_76_9   (Zebrafish)   17
Oikopleura_dioica 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   28
Adineta_vaga 11
Octopus_bimaculoides_280 5
Crassostrea_gigas_22   (Pacific oyster)   6
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 6
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 5
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 3
Drosophila_persimilis_1.3 3
Drosophila_suzukii 3
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 5
Drosophila_melanogaster_76_5   (Fruit fly)   8
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 4
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   4
Strigamia_maritima_22 5
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 7
Meloidogyne_incognita_   (Southern root-knot nematode)   3
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 7
Caenorhabditis_brenneri_ 8
Caenorhabditis_remanei_ 16
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   8
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 8
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 5
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 11
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 3
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 6
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 3
Malassezia_globosa_CBS_7966_ 10
Sporisorium_reilianum_22 2
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5
Melampsora_laricis-populina_ 5
Rhodotorula_graminis_WP1_v1.0 4
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 14
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 4
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 5
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 7
Pleurotus_ostreatus_   (Oyster mushroom)   8
Amanita_thiersii_Skay4041_v1.0 8
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6
Galerina_marginata_v1.0 16
Hebeloma_cylindrosporum_h7_v2.0 11
Laccaria_bicolor_S238N-H82_ 12
Agaricus_bisporus_var._bisporus_ 7
Schizophyllum_commune_ 14
Stereum_hirsutum_FP-91666_SS1__v1.0 8
Heterobasidion_annosum_ 5
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 5
Sebacina_vermifera_MAFF_305830_v1.0 11
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 13
Postia_placenta_ 8
Wolfiporia_cocos_MD-104_SS10__v1.0 9
Fomitopsis_pinicolav1.0 9
Fomitopsis_pinicola_FP-58527_SS1_v3.0 9
Phanerochaete_chrysosporium_RP-78_2.1 8
Dichomitus_squalens 6
Trametes_versicolor_v1.0 9
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 12
Apiospora_montagnei_NRRL_25634_v1.0 20
Magnaporthe_poae_ATCC_64411_22 9
Magnaporthe_grisea_70-15_ 11
Podospora_anserina_ 11
Sporotrichum_thermophile_ATCC_42464_ 6
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 14
Neurospora_tetrasperma_ 5
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   8
Verticillium_albo-atrum_VaMs.102_ 5
Verticillium_dahliae_VdLs.17_ 5
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 7
Fusarium_graminearum_ 7
Nectria_haematococca_mpVI_ 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 7
Trichoderma_asperellum_CBS_433.97_v1.0 6
Trichoderma_atroviride_ 7
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   6
Botrytis_cinerea_B05.10_ 6
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 6
Didymella_exigua_CBS_183.55_v1.0 8
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 6
Cochliobolus_miyabeanus_ATCC_44560_v1.0 7
Cochliobolus_victoriae_FI3_v1.0 7
Cochliobolus_carbonum_26-R-13_v1.0 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   8
Alternaria_brassicicola_ 13
Cochliobolus_lunatus_m118_v2.0 7
Pyrenophora_teres_f._teres_22 7
Pyrenophora_tritici-repentis_ 11
Stagonospora_nodorum_ 13
Mycosphaerella_graminicola_IPO323_ 8
Zasmidium_cellare_ATCC_36951_v1.0 14
Dothistroma_septosporum 11
Septoria_musiva_v1.0 8
Mycosphaerella_fijiensis_CIRAD86_ 10
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 7
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 6
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 6
Trichophyton_rubrum_CBS_118892_ 5
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 6
Penicillium_chrysogenum_v1.0 6
Aspergillus_acidus_v1.0 6
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 5
Aspergillus_nidulans_FGSC_A4_ 5
Aspergillus_sydowii_v1.0 5
Aspergillus_versicolor_v1.0 7
Aspergillus_glaucus 8
Aspergillus_carbonarius_ITEM_5010_ 6
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 6
Aspergillus_tubingensis_v1.0 7
Aspergillus_wentii_v1.0 7
Aspergillus_oryzae_RIB40_ 5
Aspergillus_niger_22 6
Aspergillus_niger_ATCC_1015_ 5
Aspergillus_flavus_NRRL3357_ 5
Aspergillus_clavatus_NRRL_1_ 6
Penicillium_marneffei_ATCC_18224_ 6
Tuber_melanosporum_Mel28_22 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   6
Hansenula_polymorpha_v2.0 6
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 5
Wickerhamomyces_anomalus 4
Pichia_pastoris_GS115_ 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 4
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5
Vanderwaltozyma_polyspora_DSM_70294_ 4
Candida_glabrata_CBS138 5
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 5
Kluyveromyces_waltii 5
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 6
Saccharomyces_mikatae_MIT 2
Saccharomyces_paradoxus_MIT 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 5
Schizosaccharomyces_cryophilus_OY26_22 8
Schizosaccharomyces_octosporus_yFS286_ 7
Schizosaccharomyces_japonicus_yFS275_ 9
Schizosaccharomyces_pombe   (Fission yeast)   8
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 10
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 4
Entamoeba_invadens_1.2 4
Entamoeba_histolytica_1 4
Selaginella_moellendorffii_ 16
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   9
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6
Gossypium_raimondii_v221 20
Citrus_clementina_v165 20
Citrus_sinensis_v154   (Sweet orange)   22
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11
Capsella_rubella_v183 8
Arabidopsis_lyrata_   (Lyrate rockcress)   10
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   6
Medicago_truncatula_   (Barrel medic)   21
Phaseolus_vulgaris_v186   (French bean)   8
Glycine_max_v109   (Soybean)   14
Cucumis_sativus_v122   (Cucumber)   6
Fragaria_vesca_   (Wild strawberry)   5
Malus_domestica_v196   (Apple)   12
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   10
Manihot_esculenta_v147   (Cassava)   12
Populus_trichocarpa_v156   (Black cottonwood)   10
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   5
Solanum_lycopersicum_v.2.3   (Tomato)   9
Solanum_tuberosum_   (Potato)   20
Actinidia_chinensis_Hongyang_ 5
Aquilegia_coerulea_v195 18
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   22
Aegilops_tauschii_22 12
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   14
Oryza_meridionalis_22 8
Oryza_glumaepatula_22 7
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 7
Oryza_nivara_22 10
Oryza_brachyantha_22   (Malo sina)   8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   9
Oryza_sativa_v193   (Rice)   8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9
Panicum_virgatum_v202   (Switchgrass)   17
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   23
Zea_mays_v181   (Maize)   22
Sorghum_bicolor_   (Sorghum)   8
Musa_balbisiana   (Balbis banana)   7
Musa_acuminata_22   (Wild Malaysian banana)   7
Amborella_trichopoda_22 1
Physcomitrella_patens 10
Coccomyxa_subellipsoidea_sp._C-169_v2 12
Asterochloris_sp._Cgr/DA1pho_v1.0 4
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 12
Volvox_carteri_f._nagariensis_ 8
Volvox_carteri_v199 7
Chlamydomonas_reinhardtii_4.0 10
Ostreococcus_sp._RCC809_ 11
Ostreococcus_lucimarinus_CCE9901_ 9
Ostreococcus_tauri_ 13
Bathycoccus_prasinos_ 5
Micromonas_sp._RCC299_ 11
Micromonas_pusilla_CCMP1545_v3.0 16
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 10
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 11
Leishmania_mexicana_2.4 7
Leishmania_major_strain_Friedlin_ 8
Leishmania_infantum_JPCM5_2.4 7
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7
Trypanosoma_vivax_ 5
Trypanosoma_cruzi_strain_CL_Brener 5
Trypanosoma_congolense_2.4 8
Trypanosoma_brucei_gambiense_v4.1 6
Trypanosoma_brucei_TREU927_v4.1 6
Ectocarpus_siliculosus 11
Aureococcus_anophagefferens_ 8
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 8
Pythium_arrhenomanes_ATCC_12531_22 9
Pythium_ultimum_v1.7-2 6
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 4
Pythium_vexans_DAOM_BR484_22 6
Phytophthora_ramorum_1.1   (Sudden oak death agent)   9
Phytophthora_sojae_1.1 9
Phytophthora_infestans_T30-4_ 15
Phytophthora_capsici_ 3
Hyaloperonospora_arabidopsidis_22 9
Phaeodactylum_tricornutumCCAP_1055/1 6
Fragilariopsis_cylindrus 29
Thalassiosira_pseudonana_CCMP1335 7
Perkinsus_marinus_ATCC_50983_ 14
Paramecium_tetraurelia_ 5
Tetrahymena_thermophila_SB210_1_ 3
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 3
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 4
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 46
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 26
Emiliania_huxleyi_CCMP1516_ 27
Paenibacillus_mucilaginosus_3016 1
Gemmatimonas_aurantiaca_T-27 1
Turneriella_parva_DSM_21527 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 1
Variovorax_paradoxus_S110 1
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._JS42 1
Oligotropha_carboxidovorans_OM4 1
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_winogradskyi_Nb-255 1
Nitrobacter_hamburgensis_X14 1
Bradyrhizobium_sp._ORS_278 1
Legionella_pneumophila_str._Corby 0
Methanoregula_boonei_6A8 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   12
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   9
Cryptococcus_neoformans_var._grubii_H99_ 5
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 6
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 4
Ajellomyces_dermatitidis_ER-3_ 6
Histoplasma_capsulatum_H143 6
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 6
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 5
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 5
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 6
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 2
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 3
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 8
Batrachochytrium_dendrobatidis_JEL423_ 3
Batrachochytrium_dendrobatidis_JAM81_ 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6
Hordeum_vulgare_22   (Domesticated barley)   23
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Trypanosoma_brucei_Lister_427_v4.1 6
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Myxococcus_stipitatus_DSM_14675 1
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Oligotropha_carboxidovorans_OM5 1
Oligotropha_carboxidovorans_OM5 1
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Legionella_pneumophila_2300/99_Alcoy 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_69_3.1   (Western gorilla)   7
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6
Macaca_mulatta_69_1   (Rhesus monkey)   8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   7
Microcebus_murinus_69_1   (Gray mouse lemur)   5
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   9
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_69_1   (Giant panda)   8
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   5
Equus_caballus_69_2   (Horse)   6
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5
Takifugu_rubripes_69_4   (Torafugu)   5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   6
Danio_rerio_69_9   (Zebrafish)   9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   4
Caenorhabditis_elegans_69_215   (Roundworm)   7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   7

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   20
Homo_sapiens__(NCBI_version)   (Human)   8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 5
Malus_x_domestica_(Duplicate)   (Apple)   12
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 13
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9
Phoenix_dactylifera__(Early_draft)   (Date palm)   11
Guillardia_theta_(nucleomorph) 0
UniProt__viral_sequences_(Viral) 3
NCBI_viral_sequences_(Viral) 6
Protozoadb_2010_08_(Protozoadb) 88
STRING_v9.0.5_(STRING) 617
NCBI_2017_08_genome 6627
Uniprot_2018_03_genome 27348
Protein_Data_Bank_(all_PDB_sequenc) 21
TargetDB__(Targets) 18

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.