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  Home > SCOP hierarchy > Domain combination - _gap_,100895,100895,_gap_

Domain combinations for _gap_,100895,100895,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

100895 - Kazal-type serine protease inhibitors
100895 - Kazal-type serine protease inhibitors

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   0
Ovis_aries_76_3.1   (Sheep)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Saccoglossus_kowalevskii_v3.0 1
Lepisosteus_oculatus_76   (Spotted gar)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 0
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Linepithema_humile_v1.1   (Argentine ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 1
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Tetranychus_urticae_   (Two-spotted spider mite)   0
Meloidogyne_hapla_ 0
Caenorhabditis_japonica_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Schistosoma_mansoni_ 0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Amphimedon_queenslandica 2
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 0
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_ultimum_v1.7-2 0
Pythium_irregulare_DAOM_BR486_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 0
Thalassiosira_pseudonana_CCMP1335 1
Cryptosporidium_muris 0
Naegleria_gruberi_ 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Felis_catus_69   (Domestic cat)   2
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 9
NCBI_2017_08_genome 84
Protozoadb_2010_08_(Protozoadb) 0
Uniprot_2018_03_genome 768

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.