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Domain combinations for _gap_,101898,101898 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101898 - NHL repeat
101898 - NHL repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Mus_musculus_76_38   (House mouse)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Sus_scrofa_76_10.2   (Pig)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Adineta_vaga 4
Crassostrea_gigas_22   (Pacific oyster)   2
Daphnia_pulex_   (Common water flea)   1
Sarcoptes_scabiei 0
Mnemiopsis_leidyi   (Sea walnut)   0
Proterospongia_sp._ATCC_50818_ 4
Bigelowiella_natans_CCMP2755_22 0
Naegleria_gruberi_ 0
Trichodesmium_erythraeum_IMS101 1
Anabaena_variabilis_ATCC_29413 0
Roseiflexus_sp._RS-1 0
Chloroflexus_sp._MS-G 0
Fluviicola_taffensis_DSM_16823 0
Opitutus_terrae_PB90-1 0
Spirochaeta_smaragdinae_DSM_11293 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Granulicella_mallensis_MP5ACTX8 1
Terriglobus_saanensis_SP1PR4 0
Acidobacterium_capsulatum_ATCC_51196 0
Bdellovibrio_bacteriovorus_HD100 0
Syntrophobacter_fumaroxidans_MPOB 2
Haliangium_ochraceum_DSM_14365 1
Sideroxydans_lithotrophicus_ES-1 0
Vibrio_anguillarum_775 0
Shewanella_piezotolerans_WP3 0
Methanosaeta_concilii_GP6 0
Methanosphaerula_palustris_E1-9c 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Oscillatoria_acuminata_PCC_6304 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Desulfosporosinus_meridiei_DSM_13257 0
Bdellovibrio_exovorus_JSS 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Vibrio_anguillarum_Listonella_anguillarum_M3 0

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Mus_musculus_69_38   (House mouse)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Sus_scrofa_69_10.2   (Pig)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 455
NCBI_2017_08_genome 94

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