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Domain combinations for _gap_,101912,103575,_gap_,82895,82895,_gap_,82895,82895,82895,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101912 - Sema domain
103575 - Plexin repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   5
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Felis_catus_76_6.2   (Domestic cat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   5
Homo_sapiens__(NCBI_version)   (Human)   1
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 2968
NCBI_2017_08_genome 96

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