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  Home > SCOP hierarchy > Domain combination - _gap_,110296,_gap_,63825,_gap_,57424,57424,57424,57424,57424,57424,57424,57424,57424,_gap_,49265,_gap_,49265,_gap_

Domain combinations for _gap_,110296,_gap_,63825,_gap_,57424,57424,57424,57424,57424,57424,57424,57424,57424,_gap_,49265,_gap_,49265,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

110296 - Oligoxyloglucan reducing end-specific cellobiohydrolase
63825 - YWTD domain
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
49265 - Fibronectin type III
49265 - Fibronectin type III

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Rhodnius_prolixus_22 0

Others
Genome     Number
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 4495
NCBI_2017_08_genome 29

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.