SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,117839,117839,_gap_,57850,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

117839 - WWE domain
117839 - WWE domain
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Bos_taurus_76_3.1   (Cattle)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Gallus_gallus_76_4   (Chicken)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Danio_rerio_76_9   (Zebrafish)   1
Capitella_sp._I_ 1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_willistoni_1.3 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Bos_taurus_69_3.1   (Cattle)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Gallus_gallus_69_2   (Chicken)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Danio_rerio_69_9   (Zebrafish)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 1368
NCBI_2017_08_genome 228

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]