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  Home > SCOP hierarchy > Domain combination - _gap_,117839,_gap_,56399,_gap_

Domain combinations for _gap_,117839,_gap_,56399,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

117839 - WWE domain
56399 - ADP-ribosylation

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Acropora_digitifera_v1.0 2
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Medicago_truncatula_   (Barrel medic)   1
Cucumis_sativus_v122   (Cucumber)   1
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Symbiodinium_minutum_clade_B1_v1.2 1

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1

Others
Genome     Number
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Uniprot_2018_03_genome 637
NCBI_2017_08_genome 54
STRING_v9.0.5_(STRING) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.