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Home > SCOP hierarchy > Domain combination - _gap_,46589,55681

Domain combinations for _gap_,46589,55681 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46589 - tRNA-binding arm
55681 - Class II aaRS and biotin synthetases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 2

Gorilla_gorilla_76_3.1 (Western gorilla) 1

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 1

Macaca_mulatta_76_1 (Rhesus monkey) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_76_3 (Small-eared galago) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 1

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 1

Equus_caballus_76_2 (Horse) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 0

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 1

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Saccoglossus_kowalevskii_v3.0 1

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Latimeria_chalumnae_76_1 (Coelacanth) 1

Gadus_morhua_76_1 (Atlantic cod) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 1

Takifugu_rubripes_76_4 (Torafugu) 2

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 1

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 1

Poecilia_formosa_76 (Amazon molly) 1

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 1

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 2

Octopus_bimaculoides_280 2

Lottia_gigantea_ (Owl limpet) 1

Capitella_sp._I_ 1

Nasonia_vitripennis_ (Jewel wasp) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 0

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_grimshawi_1.3 1

Drosophila_willistoni_1.3 1

Drosophila_pseudoobscura_2.13 1

Drosophila_persimilis_1.3 1

Drosophila_suzukii 0

Drosophila_yakuba_1.3 1

Drosophila_simulans_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_melanogaster_76_5 (Fruit fly) 1

Drosophila_erecta_1.3 1

Drosophila_ananassae_1.3 1

Drosophila_virilis_1.2 1

Drosophila_mojavensis_1.3 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 2

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Anopheles_darlingi_22 (American malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 0

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Amphimedon_queenslandica 0

Trichoplax_adhaerens_ 1

Proterospongia_sp._ATCC_50818_ 1

Monosiga_brevicollis_ 1

Sphaeroforma_arctica_JP610_ 2

Conidiobolus_coronatus_NRRL28638_v1.0 1

Mucor_circinelloides_ 1

Rhizomucor_miehei_CAU432_ 2

Rhodotorula_graminis_WP1_v1.0 1

Sporobolomyces_roseus_IAM_13481_ 1

Microbotryum_violaceum_22 0

Sphaerobolus_stellatus_v1.0 1

Piloderma_croceum_F_1598_v1.0 1

Serpula_lacrymans_var._lacrymans_S7.9_ 1

Coniophora_puteana 1

Hydnomerulius_pinastri_v2.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_microcarpus_441_v1.0 1

Pisolithus_tinctorius_Marx_270_v1.0 0

Scleroderma_citrinum_Foug_A_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 1

Pleurotus_ostreatus_ (Oyster mushroom) 1

Amanita_thiersii_Skay4041_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Galerina_marginata_v1.0 1

Hebeloma_cylindrosporum_h7_v2.0 1

Laccaria_bicolor_S238N-H82_ 1

Schizophyllum_commune_ 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Heterobasidion_annosum_ 1

Gloeophyllum_trabeumv1.0 1

Punctularia_strigosozonata_v1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Postia_placenta_ 1

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Dichomitus_squalens 0

Trametes_versicolor_v1.0 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Magnaporthe_poae_ATCC_64411_22 1

Podospora_anserina_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 1

Chaetomium_globosum_CBS_148.51_ 2

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Verticillium_albo-atrum_VaMs.102_ 1

Verticillium_dahliae_VdLs.17_ 1

Acremonium_alcalophilumv_1.0 1

Glomerella_graminicola_22 1

Fusarium_graminearum_ 1

Nectria_haematococca_mpVI_ 1

Fusarium_oxysporum_f._sp._lycopersici_4286_ 1

Fusarium_verticillioides_7600_ 1

Trichoderma_asperellum_CBS_433.97_v1.0 1

Trichoderma_atroviride_ 1

Trichoderma_citrinoviride_v1.0 1

Trichoderma_reesei_1.2 1

Trichoderma_virens_Gv29-8_ 1

Trichoderma_longibrachiatum_ATCC_18648_v1.0 1

Trichoderma_harzianum_CBS_226.95_v1.0 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 0

Botrytis_cinerea_B05.10_ 1

Sclerotinia_sclerotiorum_ 1

Blumeria_graminis_22 1

Didymella_exigua_CBS_183.55_v1.0 1

Leptosphaeria_maculans_22 1

Setosphaeria_turcica_v1.0 1

Cochliobolus_miyabeanus_ATCC_44560_v1.0 1

Cochliobolus_victoriae_FI3_v1.0 1

Cochliobolus_carbonum_26-R-13_v1.0 1

Cochliobolus_heterostrophus_ (Southern corn leaf blight pathogen) 1

Alternaria_brassicicola_ 0

Cochliobolus_lunatus_m118_v2.0 1

Pyrenophora_teres_f._teres_22 1

Pyrenophora_tritici-repentis_ 1

Stagonospora_nodorum_ 1

Mycosphaerella_graminicola_IPO323_ 1

Zasmidium_cellare_ATCC_36951_v1.0 1

Dothistroma_septosporum 1

Septoria_musiva_v1.0 1

Mycosphaerella_fijiensis_CIRAD86_ 0

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0

Trichophyton_equinum_CBS_127.97_ 1

Trichophyton_verrucosum_HKI_0517_ 1

Arthroderma_benhamiae_CBS_112371_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Uncinocarpus_reesii_1704_ 1

Aspergillus_acidus_v1.0 1

Aspergillus_fumigatus_Af293 1

Aspergillus_brasiliensis_v1.0 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Aspergillus_versicolor_v1.0 1

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_tubingensis_v1.0 1

Aspergillus_wentii_v1.0 1

Aspergillus_oryzae_RIB40_ 1

Aspergillus_niger_22 1

Aspergillus_niger_ATCC_1015_ 1

Aspergillus_flavus_NRRL3357_ 1

Aspergillus_clavatus_NRRL_1_ 1

Penicillium_marneffei_ATCC_18224_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Hansenula_polymorpha_v2.0 1

Candida_tanzawaensis_NRRL_Y-17324__v1.0 1

Candida_tropicalis_MYA-3404_ 1

Candida_parapsilosis_ 1

Candida_albicans_SC5314 1

Lodderomyces_elongisporus_NRRL_YB-4239_ 1

Pichia_stipitis_CBS_6054_ 1

Candida_guilliermondii_ATCC_6260_ 2

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1

Debaromyces_hansenii 1

Yarrowia_lipolytica_CLIB122 1

Candida_lusitaniae_ATCC_42720_ 1

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1

Vanderwaltozyma_polyspora_DSM_70294_ 1

Candida_glabrata_CBS138 1

Lachancea_kluyveri_ 1

Saccharomyces_mikatae_MIT 1

Saccharomyces_paradoxus_MIT 1

Saccharomyces_cerevisiae_76 (Baker's yeast) 1

Saccharomyces_bayanus_MIT 1

Kluyveromyces_lactis 1

Schizosaccharomyces_cryophilus_OY26_22 1

Schizosaccharomyces_octosporus_yFS286_ 1

Schizosaccharomyces_japonicus_yFS275_ 1

Schizosaccharomyces_pombe (Fission yeast) 1

Catenaria_anguillulae_PL171_v1.0 1

Allomyces_macrogynus_ATCC_38327_ 1

Spizellomyces_punctatus_DAOM_BR117_ 1

Dictyostelium_discoideum 1

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 2

Citrus_clementina_v165 1

Citrus_sinensis_v154 (Sweet orange) 1

Thellungiella_halophila_v173 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 2

Capsella_rubella_v183 1

Arabidopsis_lyrata_ (Lyrate rockcress) 1

Arabidopsis_thaliana_10 (Thale cress) 3

Carica_papaya_ (Papaya) 1

Medicago_truncatula_ (Barrel medic) 2

Phaseolus_vulgaris_v186 (French bean) 1

Glycine_max_v109 (Soybean) 1

Cucumis_sativus_v122 (Cucumber) 1

Fragaria_vesca_ (Wild strawberry) 3

Malus_domestica_v196 (Apple) 2

Prunus_persica_v139 (Peach) 1

Linum_usitatissimum_v200 (Flax) 2

Populus_trichocarpa_v156 (Black cottonwood) 1

Vitis_vinifera_ (Wine grape) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Solanum_tuberosum_ (Potato) 1

Actinidia_chinensis_Hongyang_ 1

Aquilegia_coerulea_v195 1

Triticum_aestivum_22 (Bread wheat) 1

Brachypodium_distachyon_ (Stiff brome) 1

Oryza_barthii_22 (African wild rice) 1

Oryza_meridionalis_22 1

Oryza_glumaepatula_22 1

Oryza_glaberrima (African rice) 1

Oryza_punctata_22 2

Oryza_nivara_22 1

Oryza_brachyantha_22 (Malo sina) 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 0

Panicum_virgatum_v202 (Switchgrass) 1

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 2

Zea_mays_v181 (Maize) 2

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 1

Musa_acuminata_22 (Wild Malaysian banana) 1

Amborella_trichopoda_22 1

Asterochloris_sp._Cgr/DA1pho_v1.0 1

Chlorella_variabilis_sp._NC64A_ 1

Volvox_carteri_f._nagariensis_ 0

Volvox_carteri_v199 0

Ostreococcus_lucimarinus_CCE9901_ 1

Ostreococcus_tauri_ 1

Bathycoccus_prasinos_ 1

Micromonas_sp._RCC299_ 1

Cyanidioschyzon_merolae_strain_10D_22 1

Cyanidioschyzon_merolae 1

Porphyridium_purpureum_02_2012 2

Ectocarpus_siliculosus 2

Aureococcus_anophagefferens_ 1

Pythium_iwayamai_DAOM_BR242034_22 2

Pythium_arrhenomanes_ATCC_12531_22 2

Pythium_ultimum_v1.7-2 1

Pythium_aphanidermatum_DAOM_BR444_22 1

Pythium_irregulare_DAOM_BR486_22 1

Pythium_vexans_DAOM_BR484_22 1

Phytophthora_ramorum_1.1 (Sudden oak death agent) 1

Phytophthora_sojae_1.1 1

Phytophthora_infestans_T30-4_ 1

Phytophthora_capsici_ 1

Hyaloperonospora_arabidopsidis_22 2

Babesia_bovis_T2Bo_ 2

Theileria_parva__ 1

Plasmodium_chabaudi_ 1

Symbiodinium_minutum_clade_B1_v1.2 0

Naegleria_gruberi_ 1

Nakamurella_multipartita_DSM_44233 1

Frankia_symbiont_of_Datisca_glomerata 1

Mycobacterium_gilvum_PYR-GCK 1

Mycobacterium_chubuense_NBB4 1

Corynebacterium_urealyticum_DSM_7109 1

Sanguibacter_keddieii_DSM_10542 1

Rothia_mucilaginosa_DY-18 1

Rothia_dentocariosa_ATCC_17931 1

Gardnerella_vaginalis_409-05 1

Bifidobacterium_bifidum_S17 1

Thermaerobacter_marianensis_DSM_12885 1

Streptococcus_gallolyticus_UCN34 1

Streptococcus_mitis_B6 1

Desulfurispirillum_indicum_S5 1

Anaeromyxobacter_sp._Fw109-5 1

Herbaspirillum_seropedicae_SmR1 1

Rhodospirillum_photometricum_DSM_122 1

Rickettsia_massiliae_MTU5 1

Brucella_ovis_ATCC_25840 1

Halothiobacillus_neapolitanus_c2 1

secondary_endosymbiont_of_Ctenarytaina_eucalypti 1

Psychrobacter_sp._G 1

Psychrobacter_sp._PRwf-1 1

Methanosarcina_barkeri_str._Fusaro 1

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Longest transcript per gene
Genome Number

Pongo_abelii_69_2 (Sumatran orangutan) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Felis_catus_69 (Domestic cat) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Pteropus_vampyrus_69_1 (Large flying fox) 0

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 1

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 1

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 1

Danio_rerio_69_9 (Zebrafish) 1

Drosophila_melanogaster_69_5 (Fruit fly) 1

Saccharomyces_cerevisiae_69_4 (Baker's yeast) 1

Arabidopsis_thaliana_10 (Thale cress) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 2

Homo_sapiens__(NCBI_version) (Human) 1

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Moniliophthora_perniciosa_FA553__(Genome_survey) 1

Malus_x_domestica_(Duplicate) (Apple) 2

Ricinus_communis__(Early_assembly) (Castor bean) 3

Nicotiana_benthamiana_0.4.4_(Early_draft) 0

Protein_Data_Bank_(all_PDB_sequenc) 2

Core_Eukaryotic_Genes_458_(CEGMA) 4

Protozoadb_2010_08_(Protozoadb) 2

STRING_v9.0.5_(STRING) 87

NCBI_2017_08_genome 1097

TargetDB__(Targets) 2

Uniprot_2018_03_genome 7458

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Domain combinations for _gap_,46589,55681 superfamilies in groups of genomes