SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,46785,51206,48366 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
51206 - cAMP-binding domain-like
48366 - Ras GEF

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Canis_familiaris_76_3.1   (Dog)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Meleagris_gallopavo_76_2   (Turkey)   1
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Caenorhabditis_japonica_ 0

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Felis_catus_69   (Domestic cat)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Meleagris_gallopavo_69_2   (Turkey)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
STRING_v9.0.5_(STRING) 0
NCBI_2017_08_genome 5
Uniprot_2018_03_genome 250

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