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  Home > SCOP hierarchy > Domain combination - _gap_,46938,52087,_gap_,101576

Domain combinations for _gap_,46938,52087,_gap_,101576 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46938 - CRAL/TRIO N-terminal domain
52087 - CRAL/TRIO domain
101576 - Supernatant protein factor (SPF), C-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 0
Cryptosporidium_parvum_Iowa_II 0

Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1

Others
Genome     Number
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 6
Uniprot_2018_03_genome 196

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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