SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47031,50729,_gap_,50156,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47031 - Second domain of FERM
50729 - PH domain-like
50156 - PDZ domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Vicugna_pacos_76_1   (Alpaca)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1

Longest transcript per gene
Genome     Number
Vicugna_pacos_69_1   (Alpaca)   0
Felis_catus_69   (Domestic cat)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 0
NCBI_2017_08_genome 13
Uniprot_2018_03_genome 228

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