SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47095,_gap_,47095,47095,47095,47095,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47095 - HMG-box
47095 - HMG-box
47095 - HMG-box
47095 - HMG-box
47095 - HMG-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   5
Pongo_abelii_76_2   (Sumatran orangutan)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   5
Ovis_aries_76_3.1   (Sheep)   1

Longest transcript per gene
Genome     Number
Felis_catus_69   (Domestic cat)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   5
Homo_sapiens__(NCBI_version)   (Human)   2
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 1375
NCBI_2017_08_genome 195

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