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Domain combinations for _gap_,47459,158457,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   6
Pongo_abelii_76_2   (Sumatran orangutan)   5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   4
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   4
Mus_musculus_76_38   (House mouse)   4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   3
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   4
Xenopus_laevis_   (African clawed frog)   5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   8
Latimeria_chalumnae_76_1   (Coelacanth)   5
Lepisosteus_oculatus_76   (Spotted gar)   6
Gadus_morhua_76_1   (Atlantic cod)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6
Takifugu_rubripes_76_4   (Torafugu)   12
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6
Oryzias_latipes_76_1   (Japanese medaka)   7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   7
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   7
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 1
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 4
Drosophila_suzukii 3
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 1
Strigamia_maritima_22 3
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Trichinella_spiralis_22 3
Taenia_solium_   (Pork tapeworm)   1
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Trichoplax_adhaerens_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   3
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   7
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   7
Homo_sapiens__(NCBI_version)   (Human)   7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 146
Uniprot_2018_03_genome 9162
NCBI_2017_08_genome 1530

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