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  Home > SCOP hierarchy > Domain combination - _gap_,47473

Domain combinations for _gap_,47473 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47473 - EF-hand

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   83
Pan_troglodytes_76_2.1.4   (Chimpanzee)   21
Gorilla_gorilla_76_3.1   (Western gorilla)   34
Pongo_abelii_76_2   (Sumatran orangutan)   34
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   27
Papio_anubis_76   (Olive baboon)   19
Macaca_mulatta_76_1   (Rhesus monkey)   42
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   52
Otolemur_garnettii_76_3   (Small-eared galago)   25
Microcebus_murinus_76_1   (Gray mouse lemur)   14
Rattus_norvegicus_76_5.0   (Norway rat)   33
Mus_musculus_76_38   (House mouse)   59
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   19
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   20
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   24
Cavia_porcellus_76_3   (Domestic guinea pig)   17
Oryctolagus_cuniculus_76_2   (Rabbit)   23
Ochotona_princeps_76   (American pika)   22
Tupaia_belangeri_76   (Northern tree shrew)   17
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   16
Ovis_aries_76_3.1   (Sheep)   26
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   21
Mustela_putorius_furo_76_1.0   (Domestic ferret)   21
Ailuropoda_melanoleuca_76_1   (Giant panda)   28
Canis_familiaris_76_3.1   (Dog)   32
Felis_catus_76_6.2   (Domestic cat)   19
Equus_caballus_76_2   (Horse)   19
Myotis_lucifugus_76_2.0   (Little brown bat)   20
Pteropus_vampyrus_76_1   (Large flying fox)   21
Sorex_araneus_76_1   (European shrew)   13
Erinaceus_europaeus_76   (Western European hedgehog)   18
Procavia_capensis_76_1   (Cape rock hyrax)   28
Loxodonta_africana_76_3   (African savanna elephant)   27
Echinops_telfairi_76   (Small Madagascar hedgehog)   19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_76_1.0   (Tammar wallaby)   20
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   23
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   24
Ornithorhynchus_anatinus_76_5   (Platypus)   16
Saccoglossus_kowalevskii_v3.0 29
Petromyzon_marinus_76_7.0   (Sea lamprey)   5
Meleagris_gallopavo_76_2   (Turkey)   12
Gallus_gallus_76_4   (Chicken)   19
Anas_platyrhynchos_76_1.0   (Mallard)   14
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   18
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   20
Anolis_carolinensis_76_2.0   (Green anole)   19
Xenopus_laevis_   (African clawed frog)   21
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   16
Latimeria_chalumnae_76_1   (Coelacanth)   21
Lepisosteus_oculatus_76   (Spotted gar)   30
Gadus_morhua_76_1   (Atlantic cod)   20
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   25
Takifugu_rubripes_76_4   (Torafugu)   50
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   34
Oryzias_latipes_76_1   (Japanese medaka)   34
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   18
Poecilia_formosa_76   (Amazon molly)   27
Oreochromis_niloticus_76_1.0   (Nile tilapia)   30
Astyanax_mexicanus_76   (Mexican tetra)   31
Danio_rerio_76_9   (Zebrafish)   36
Oikopleura_dioica 29
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   26
Ciona_intestinalis_76   (Vase tunicate)   18
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   20
Adineta_vaga 89
Octopus_bimaculoides_280 24
Crassostrea_gigas_22   (Pacific oyster)   27
Lottia_gigantea_   (Owl limpet)   34
Helobdella_robusta_ 18
Capitella_sp._I_ 25
Danaus_plexippus_OGS1.0   (Monarch butterfly)   15
Heliconius_melpomene_   (Postman butterfly)   13
Bombyx_mori_   (Domestic silkworm)   12
Nasonia_vitripennis_   (Jewel wasp)   15
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   21
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   10
Linepithema_humile_v1.1   (Argentine ant)   12
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   13
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   12
Atta_cephalotes_v1.1 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   11
Lucilia_cuprina   (Australian sheep blowfly)   9
Drosophila_grimshawi_1.3 8
Drosophila_willistoni_1.3 14
Drosophila_pseudoobscura_2.13 12
Drosophila_persimilis_1.3 12
Drosophila_suzukii 17
Drosophila_yakuba_1.3 16
Drosophila_simulans_1.3 11
Drosophila_sechellia_1.3 15
Drosophila_melanogaster_76_5   (Fruit fly)   26
Drosophila_erecta_1.3 14
Drosophila_ananassae_1.3 14
Drosophila_virilis_1.2 12
Drosophila_mojavensis_1.3 14
Megaselia_scalaris_22 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10
Anopheles_darlingi_22   (American malaria mosquito)   11
Anopheles_gambiae_49_3j   (African malaria mosquito)   10
Tribolium_castaneum_3.0   (Red flour beetle)   9
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   13
Acyrthosiphon_pisum_   (Pea aphid)   10
Rhodnius_prolixus_22 10
Daphnia_pulex_   (Common water flea)   13
Strigamia_maritima_22 9
Sarcoptes_scabiei 10
Tetranychus_urticae_   (Two-spotted spider mite)   5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   12
Pristionchus_pacificus_ 10
Meloidogyne_incognita_   (Southern root-knot nematode)   5
Meloidogyne_hapla_ 9
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   18
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 10
Caenorhabditis_remanei_ 16
Caenorhabditis_elegans_76_235   (Roundworm)   19
Caenorhabditis_briggsae_2 9
Trichinella_spiralis_22 13
Hymenolepis_microstoma_ 13
Echinococcus_multilocularis_ 14
Echinococcus_granulosus_ 18
Taenia_solium_   (Pork tapeworm)   12
Schistosoma_mansoni_ 14
Mnemiopsis_leidyi   (Sea walnut)   28
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 21
Nematostella_vectensis_1.0   (Starlet sea anemone)   22
Hydra_vulgaris 19
Amphimedon_queenslandica 12
Trichoplax_adhaerens_ 15
Proterospongia_sp._ATCC_50818_ 15
Monosiga_brevicollis_ 10
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 3
Mortierella_verticillata_NRRL_6337_ 6
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 5
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 3
Ustilago_maydis_ 6
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 2
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 5
Piloderma_croceum_F_1598_v1.0 6
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 5
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 4
Pisolithus_microcarpus_441_v1.0 4
Pisolithus_tinctorius_Marx_270_v1.0 6
Scleroderma_citrinum_Foug_A_v1.0 4
Coprinopsis_cinerea_okayama7_130_v3 4
Pleurotus_ostreatus_   (Oyster mushroom)   4
Amanita_thiersii_Skay4041_v1.0 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 4
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 3
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 4
Fomitiporia_mediterranea_v1.0 5
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 7
Wolfiporia_cocos_MD-104_SS10__v1.0 6
Fomitopsis_pinicolav1.0 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 5
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 5
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 3
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 4
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5
Fusarium_verticillioides_7600_ 6
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   4
Botrytis_cinerea_B05.10_ 3
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 4
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6
Cochliobolus_victoriae_FI3_v1.0 5
Cochliobolus_carbonum_26-R-13_v1.0 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 4
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 5
Septoria_musiva_v1.0 5
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 5
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 5
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 4
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 4
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 5
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 5
Aspergillus_carbonarius_ITEM_5010_ 5
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 4
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 5
Aspergillus_clavatus_NRRL_1_ 5
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 2
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 4
Allomyces_macrogynus_ATCC_38327_ 13
Spizellomyces_punctatus_DAOM_BR117_ 6
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 7
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 26
Pinus_taeda   (Loblolly pine)   26
Picea_abies   (Norway spruce)   20
Eucalyptus_grandis_v201   (Rose gum)   55
Theobroma_cacao_B97-61/B2_v1   (Cacao)   27
Gossypium_raimondii_v221 72
Citrus_clementina_v165 41
Citrus_sinensis_v154   (Sweet orange)   48
Thellungiella_halophila_v173 28
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   30
Capsella_rubella_v183 25
Arabidopsis_lyrata_   (Lyrate rockcress)   22
Arabidopsis_thaliana_10   (Thale cress)   30
Carica_papaya_   (Papaya)   24
Medicago_truncatula_   (Barrel medic)   47
Phaseolus_vulgaris_v186   (French bean)   34
Glycine_max_v109   (Soybean)   55
Cucumis_sativus_v122   (Cucumber)   26
Fragaria_vesca_   (Wild strawberry)   25
Malus_domestica_v196   (Apple)   71
Prunus_persica_v139   (Peach)   20
Linum_usitatissimum_v200   (Flax)   31
Manihot_esculenta_v147   (Cassava)   35
Populus_trichocarpa_v156   (Black cottonwood)   44
Vitis_vinifera_   (Wine grape)   18
Mimulus_guttatus_v140   (Spotted monkey flower)   23
Solanum_lycopersicum_v.2.3   (Tomato)   25
Solanum_tuberosum_   (Potato)   30
Actinidia_chinensis_Hongyang_ 46
Aquilegia_coerulea_v195 38
Triticum_urartu_22 24
Triticum_aestivum_22   (Bread wheat)   62
Aegilops_tauschii_22 24
Brachypodium_distachyon_   (Stiff brome)   47
Oryza_barthii_22   (African wild rice)   33
Oryza_meridionalis_22 40
Oryza_glumaepatula_22 52
Oryza_glaberrima   (African rice)   34
Oryza_punctata_22 46
Oryza_nivara_22 49
Oryza_brachyantha_22   (Malo sina)   25
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   48
Oryza_sativa_v193   (Rice)   48
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   29
Panicum_virgatum_v202   (Switchgrass)   62
Setaria_italica_v164   (Foxtail millet)   42
Zea_mays_subsp._mays_   (Maize)   74
Zea_mays_v181   (Maize)   85
Sorghum_bicolor_   (Sorghum)   33
Musa_balbisiana   (Balbis banana)   36
Musa_acuminata_22   (Wild Malaysian banana)   26
Amborella_trichopoda_22 21
Physcomitrella_patens 16
Coccomyxa_subellipsoidea_sp._C-169_v2 7
Asterochloris_sp._Cgr/DA1pho_v1.0 10
Chlorella_variabilis_sp._NC64A_ 10
Chlorella_vulgaris_ 9
Volvox_carteri_f._nagariensis_ 16
Volvox_carteri_v199 20
Chlamydomonas_reinhardtii_4.0 19
Ostreococcus_sp._RCC809_ 5
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 8
Micromonas_pusilla_CCMP1545_v3.0 11
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 10
Thecamonas_trahens_ATCC_50062_ 22
Bigelowiella_natans_CCMP2755_22 54
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 14
Leishmania_mexicana_2.4 19
Leishmania_major_strain_Friedlin_ 14
Leishmania_infantum_JPCM5_2.4 15
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 14
Trypanosoma_vivax_ 13
Trypanosoma_cruzi_strain_CL_Brener 15
Trypanosoma_congolense_2.4 21
Trypanosoma_brucei_gambiense_v4.1 22
Trypanosoma_brucei_TREU927_v4.1 22
Ectocarpus_siliculosus 23
Aureococcus_anophagefferens_ 15
Albugo_laibachii_22 14
Pythium_iwayamai_DAOM_BR242034_22 17
Pythium_arrhenomanes_ATCC_12531_22 17
Pythium_ultimum_v1.7-2 24
Pythium_aphanidermatum_DAOM_BR444_22 21
Pythium_irregulare_DAOM_BR486_22 18
Pythium_vexans_DAOM_BR484_22 18
Phytophthora_ramorum_1.1   (Sudden oak death agent)   17
Phytophthora_sojae_1.1 24
Phytophthora_infestans_T30-4_ 20
Phytophthora_capsici_ 14
Hyaloperonospora_arabidopsidis_22 3
Phaeodactylum_tricornutumCCAP_1055/1 11
Fragilariopsis_cylindrus 23
Thalassiosira_pseudonana_CCMP1335 10
Perkinsus_marinus_ATCC_50983_ 25
Paramecium_tetraurelia_ 88
Tetrahymena_thermophila_SB210_1_ 35
Ichthyophthirius_multifiliis_strain_G5_ 19
Cryptosporidium_hominis 4
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 7
Neospora_caninum 13
Toxoplasma_gondii_VEG 18
Toxoplasma_gondii_ME49 20
Toxoplasma_gondii_GT1 19
Babesia_bovis_T2Bo_ 8
Theileria_parva__ 3
Theileria_annulata 6
Plasmodium_falciparum_3D7_ 6
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 6
Plasmodium_yoelii_ssp._yoelii_1_ 8
Plasmodium_chabaudi_ 7
Plasmodium_berghei_ANKA_ 6
Symbiodinium_minutum_clade_B1_v1.2 150
Naegleria_gruberi_ 15
Trichomonas_vaginalis_ 9
Guillardia_theta_CCMP2712_v1.0_ 55
Emiliania_huxleyi_CCMP1516_ 54
Leptolyngbya_sp._PCC_7376 1
Synechococcus_sp._CC9311 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Cyanothece_sp._PCC_8802 1
cyanobacterium_UCYN-A 1
Microcystis_aeruginosa_NIES-843 1
Kitasatospora_setae_KM-6054 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Ruminococcus_albus_7 0
Desulfotomaculum_ruminis_DSM_2154 0
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_anthracis_str._A0248 0
Lacinutrix_sp._5H-3-7-4 2
Planctomyces_brasiliensis_DSM_5305 0
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 1
Akkermansia_muciniphila_ATCC_BAA-835 1
Candidatus_Solibacter_usitatus_Ellin6076 0
Bdellovibrio_bacteriovorus_HD100 3
Arcobacter_sp._L 1
Arcobacter_butzleri_RM4018 0
Helicobacter_cinaedi_PAGU611 0
Desulfotalea_psychrophila_LSv54 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_salexigens_DSM_2638 2
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_lovleyi_SZ 1
Sorangium_cellulosum_'So_ce_56' 1
Stigmatella_aurantiaca_DW4/3-1 2
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 1
Aromatoleum_aromaticum_EbN1 1
Pseudogulbenkiania_sp._NH8B 1
Burkholderia_phytofirmans_PsJN 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_metallidurans_CH34 1
Burkholderia_sp._RPE64 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Acidovorax_ebreus_TPSY 2
Acidovorax_sp._KKS102 2
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 2
Acidovorax_avenae_subsp._avenae_ATCC_19860 2
Nitrosomonas_sp._Is79A3 0
Gallionella_capsiferriformans_ES-2 0
Methylovorus_sp._MP688 1
Methylovorus_glucosetrophus_SIP3-4 2
Parvularcula_bermudensis_HTCC2503 1
Brevundimonas_subvibrioides_ATCC_15264 2
Caulobacter_sp._K31 1
Caulobacter_crescentus_NA1000 1
Caulobacter_segnis_ATCC_21756 1
Erythrobacter_litoralis_HTCC2594 1
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_sp._PP1Y 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_sp._SYK-6 2
Sphingobium_japonicum_UT26S 1
Sphingobium_chlorophenolicum_L-1 2
Sphingomonas_sp._MM-1 1
Sphingomonas_wittichii_RW1 2
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1
Maricaulis_maris_MCS10 2
Hirschia_baltica_ATCC_49814 4
Hyphomonas_neptunium_ATCC_15444 1
Dinoroseobacter_shibae_DFL_12 2
Pseudovibrio_sp._FO-BEG1 1
Jannaschia_sp._CCS1 1
Ruegeria_sp._TM1040 1
Ruegeria_pomeroyi_DSS-3 1
Rhodobacter_sphaeroides_ATCC_17029 2
Rhodospirillum_photometricum_DSM_122 0
Magnetospirillum_magneticum_AMB-1 0
Rhodospirillum_centenum_SW 2
Acetobacter_pasteurianus_IFO_3283-01 1
Micavibrio_aeruginosavorus_ARL-13 1
Methylobacterium_extorquens_AM1 0
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 3
Agrobacterium_radiobacter_K84 2
Agrobacterium_sp._H13-3 1
Agrobacterium_vitis_S4 1
Mesorhizobium_sp._BNC1 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Mesorhizobium_loti_MAFF303099 1
Methylocystis_sp._SC2 1
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 2
Halomonas_elongata_DSM_2581 0
Methylomicrobium_alcaliphilum 1
Methylomonas_methanica_MC09 1
Pseudoxanthomonas_spadix_BD-a59 1
Pseudoxanthomonas_suwonensis_11-1 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 1
Nitrosococcus_watsonii_C-113 0
Nitrosococcus_halophilus_Nc4 1
Pseudomonas_putida_F1 1
Methanohalobium_evestigatum_Z-7303 1
Thermococcus_gammatolerans_EJ3 0
Haloquadratum_walsbyi_DSM_16790 1
Methanobrevibacter_ruminantium_M1 3
Methanobrevibacter_smithii_ATCC_35061 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   35
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   24
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   12
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   14
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   15
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 4
Coccidioides_immitis_RMSCC_2394_ 5
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 8
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 5
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 3
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 7
Batrachochytrium_dendrobatidis_JAM81_ 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   20
Hordeum_vulgare_22   (Domesticated barley)   48
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   36
Trypanosoma_brucei_Lister_427_v4.1 22
Neospora_caninum_Nc-Liverpool_6.2 13
Plasmodium_falciparum_HB3_ 6
Plasmodium_falciparum_Dd2_ 5
Prochlorococcus_marinus_str._MIT_9303 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cylindrospermum_stagnale_PCC_7417 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_collinus_Tu_365 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 3
Streptococcus_oligofermentans_AS_1.3089 1
Exiguobacterium_antarcticum_B7 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 0
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Singulisphaera_acidiphila_DSM_18658 0
Bdellovibrio_bacteriovorus_str._Tiberius 3
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 1
Pandoraea_pnomenusa_3kgm 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._KJ006 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Caulobacter_crescentus_CB15 2
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1
Zymomonas_mobilis_subsp._mobilis_CP4 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1
Rhodobacter_sphaeroides_KD131 1
Rhodobacter_sphaeroides_2.4.1 2
Acetobacter_pasteurianus_IFO_3283-12 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1
Acetobacter_pasteurianus_IFO_3283-32 1
Acetobacter_pasteurianus_IFO_3283-26 1
Acetobacter_pasteurianus_IFO_3283-22 1
Acetobacter_pasteurianus_IFO_3283-07 1
Acetobacter_pasteurianus_IFO_3283-03 1
Micavibrio_aeruginosavorus_EPB 1
Methylobacterium_extorquens_DM4 1
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 2
Rhizobium_etli_bv._mimosae_str._Mim1 2
Rhizobium_leguminosarum_bv._trifolii_WSM2304 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2
Mesorhizobium_australicum_WSM2073 1
Hyphomicrobium_nitrativorans_NL23 1
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 2
Alteromonas_macleodii_str._'Ionian_Sea_U8' 2
Alteromonas_macleodii_str._'Ionian_Sea_U7' 2
Alteromonas_macleodii_str._'Ionian_Sea_U4' 2
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2
Alteromonas_macleodii_str._'English_Channel_615' 2
Alteromonas_macleodii_AltDE1 2
Alteromonas_macleodii_str._'English_Channel_673' 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2
Alteromonas_macleodii_str._'Black_Sea_11' 2
Alteromonas_macleodii_ATCC_27126 3
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Thioflavicoccus_mobilis_8321 1
Dickeya_dadantii_3937 0
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Archaeoglobus_sulfaticallidus_PM70-1 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   29
Pan_troglodytes_69_2.1.4   (Chimpanzee)   21
Gorilla_gorilla_69_3.1   (Western gorilla)   27
Pongo_abelii_69_2   (Sumatran orangutan)   31
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   21
Macaca_mulatta_69_1   (Rhesus monkey)   24
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   23
Otolemur_garnettii_69_3   (Small-eared galago)   23
Microcebus_murinus_69_1   (Gray mouse lemur)   14
Rattus_norvegicus_69_3.4   (Norway rat)   25
Mus_musculus_69_38   (House mouse)   22
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   19
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   20
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   22
Ochotona_princeps_69   (American pika)   22
Tupaia_belangeri_69   (Northern tree shrew)   17
Sus_scrofa_69_10.2   (Pig)   19
Bos_taurus_69_3.1   (Cattle)   16
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   21
Mustela_putorius_furo_69_1.0   (Domestic ferret)   20
Ailuropoda_melanoleuca_69_1   (Giant panda)   25
Canis_familiaris_69_3.1   (Dog)   26
Felis_catus_69   (Domestic cat)   20
Equus_caballus_69_2   (Horse)   17
Myotis_lucifugus_69_2.0   (Little brown bat)   20
Pteropus_vampyrus_69_1   (Large flying fox)   21
Sorex_araneus_69_1   (European shrew)   13
Erinaceus_europaeus_69   (Western European hedgehog)   18
Procavia_capensis_69_1   (Cape rock hyrax)   28
Loxodonta_africana_69_3   (African savanna elephant)   19
Echinops_telfairi_69   (Small Madagascar hedgehog)   19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   21
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_69_1.0   (Tammar wallaby)   20
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   20
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   24
Ornithorhynchus_anatinus_69_5   (Platypus)   14
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   10
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   9
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   18
Anolis_carolinensis_69_2.0   (Green anole)   21
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   14
Latimeria_chalumnae_69_1   (Coelacanth)   19
Gadus_morhua_69_1   (Atlantic cod)   19
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   25
Takifugu_rubripes_69_4   (Torafugu)   28
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   26
Oryzias_latipes_69_1   (Japanese medaka)   23
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   18
Oreochromis_niloticus_69_1.0   (Nile tilapia)   25
Danio_rerio_69_9   (Zebrafish)   30
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   20
Ciona_intestinalis_69   (Vase tunicate)   16
Drosophila_melanogaster_69_5   (Fruit fly)   16
Caenorhabditis_elegans_69_215   (Roundworm)   13
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   21

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   84
Homo_sapiens__(NCBI_version)   (Human)   41
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   22
Heliconius_numata__(Incomplete) 5
Loa_loa_v3.3_(Request)   (Eye worm)   9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   10
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   10
Lotus_japonicus__(Early_assembly) 17
Malus_x_domestica_(Duplicate)   (Apple)   71
Ricinus_communis__(Early_assembly)   (Castor bean)   18
Nicotiana_benthamiana_0.4.4_(Early_draft) 48
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   24
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   25
Phoenix_dactylifera__(Early_draft)   (Date palm)   13
NCBI_plasmid_sequences_(Plasmids) 17
STRING_v9.0.5_(STRING) 1609
NCBI_viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 25
Uniprot_2018_03_genome 63108
NCBI_2017_08_genome 23608
Protein_Data_Bank_(all_PDB_sequenc) 39
PDB_chains_(SCOP_1.75)_(PDB) 2
UniProt__viral_sequences_(Viral) 0
TargetDB__(Targets) 116
Protozoadb_2010_08_(Protozoadb) 279

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.