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Home > SCOP hierarchy > Domain combination - _gap_,47473,51695,49562

Domain combinations for _gap_,47473,51695,49562 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47473 - EF-hand
51695 - PLC-like phosphodiesterases
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Erinaceus_europaeus_76 (Western European hedgehog) 1

Procavia_capensis_76_1 (Cape rock hyrax) 0

Loxodonta_africana_76_3 (African savanna elephant) 1

Macropus_eugenii_76_1.0 (Tammar wallaby) 1

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1

Meloidogyne_incognita_ (Southern root-knot nematode) 1

Onchocerca_volvulus_22 2

Mnemiopsis_leidyi (Sea walnut) 0

Nematostella_vectensis_1.0 (Starlet sea anemone) 1

Hydra_vulgaris 1

Capsaspora_owczarzaki_ATCC_30864_ 0

Candida_tanzawaensis_NRRL_Y-17324__v1.0 1

Candida_tropicalis_MYA-3404_ 1

Candida_parapsilosis_ 1

Candida_guilliermondii_ATCC_6260_ 1

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1

Debaromyces_hansenii 1

Pichia_pastoris_GS115_ 1

Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1

Allomyces_macrogynus_ATCC_38327_ 1

Malus_domestica_v196 (Apple) 1

Porphyridium_purpureum_02_2012 1

Leishmania_mexicana_2.4 3

Leishmania_major_strain_Friedlin_ 2

Leishmania_infantum_JPCM5_2.4 3

Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2

Trypanosoma_vivax_ 1

Trypanosoma_cruzi_strain_CL_Brener 1

Trypanosoma_congolense_2.4 1

Trypanosoma_brucei_gambiense_v4.1 1

Trypanosoma_brucei_TREU927_v4.1 1

Phaeodactylum_tricornutumCCAP_1055/1 3

Fragilariopsis_cylindrus 2

Paramecium_tetraurelia_ 3

Naegleria_gruberi_ 0

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Strains
Genome Number

Trypanosoma_brucei_Lister_427_v4.1 1

Longest transcript per gene
Genome Number

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Felis_catus_69 (Domestic cat) 1

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 0

Loxodonta_africana_69_3 (African savanna elephant) 1

Macropus_eugenii_69_1.0 (Tammar wallaby) 1

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1

Others
Genome Number

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Malus_x_domestica_(Duplicate) (Apple) 1

TargetDB__(Targets) 1

Protozoadb_2010_08_(Protozoadb) 8

STRING_v9.0.5_(STRING) 12

NCBI_2017_08_genome 69

Uniprot_2018_03_genome 1120

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Domain combinations for _gap_,47473,51695,49562 superfamilies in groups of genomes