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  Home > SCOP hierarchy > Domain combination - _gap_,47473,_gap_

Domain combinations for _gap_,47473,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47473 - EF-hand

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   46
Pan_troglodytes_76_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_76_3.1   (Western gorilla)   16
Pongo_abelii_76_2   (Sumatran orangutan)   9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15
Papio_anubis_76   (Olive baboon)   19
Macaca_mulatta_76_1   (Rhesus monkey)   28
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30
Otolemur_garnettii_76_3   (Small-eared galago)   11
Microcebus_murinus_76_1   (Gray mouse lemur)   15
Rattus_norvegicus_76_5.0   (Norway rat)   22
Mus_musculus_76_38   (House mouse)   23
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   15
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   19
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   14
Cavia_porcellus_76_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_76_2   (Rabbit)   15
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   14
Sus_scrofa_76_10.2   (Pig)   19
Bos_taurus_76_3.1   (Cattle)   14
Ovis_aries_76_3.1   (Sheep)   15
Vicugna_pacos_76_1   (Alpaca)   11
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   13
Ailuropoda_melanoleuca_76_1   (Giant panda)   15
Canis_familiaris_76_3.1   (Dog)   22
Felis_catus_76_6.2   (Domestic cat)   13
Equus_caballus_76_2   (Horse)   18
Myotis_lucifugus_76_2.0   (Little brown bat)   12
Pteropus_vampyrus_76_1   (Large flying fox)   13
Sorex_araneus_76_1   (European shrew)   13
Erinaceus_europaeus_76   (Western European hedgehog)   14
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   20
Echinops_telfairi_76   (Small Madagascar hedgehog)   13
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   15
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_76_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   17
Ornithorhynchus_anatinus_76_5   (Platypus)   13
Saccoglossus_kowalevskii_v3.0 59
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   11
Gallus_gallus_76_4   (Chicken)   9
Anas_platyrhynchos_76_1.0   (Mallard)   7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   11
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   11
Anolis_carolinensis_76_2.0   (Green anole)   13
Xenopus_laevis_   (African clawed frog)   14
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_76_1   (Coelacanth)   16
Lepisosteus_oculatus_76   (Spotted gar)   14
Gadus_morhua_76_1   (Atlantic cod)   11
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   12
Takifugu_rubripes_76_4   (Torafugu)   23
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   13
Poecilia_formosa_76   (Amazon molly)   11
Oreochromis_niloticus_76_1.0   (Nile tilapia)   17
Astyanax_mexicanus_76   (Mexican tetra)   13
Danio_rerio_76_9   (Zebrafish)   15
Oikopleura_dioica 8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14
Adineta_vaga 18
Octopus_bimaculoides_280 12
Crassostrea_gigas_22   (Pacific oyster)   16
Lottia_gigantea_   (Owl limpet)   12
Helobdella_robusta_ 5
Capitella_sp._I_ 11
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   8
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8
Linepithema_humile_v1.1   (Argentine ant)   11
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   10
Atta_cephalotes_v1.1 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 7
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 3
Drosophila_suzukii 8
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   10
Drosophila_erecta_1.3 7
Drosophila_ananassae_1.3 7
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 2
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9
Anopheles_darlingi_22   (American malaria mosquito)   7
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   6
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 8
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   8
Meloidogyne_hapla_ 5
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7
Caenorhabditis_japonica_ 6
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 4
Caenorhabditis_elegans_76_235   (Roundworm)   8
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   5
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   10
Acropora_digitifera_v1.0 8
Nematostella_vectensis_1.0   (Starlet sea anemone)   10
Hydra_vulgaris 11
Amphimedon_queenslandica 6
Trichoplax_adhaerens_ 10
Proterospongia_sp._ATCC_50818_ 10
Monosiga_brevicollis_ 6
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 1
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 0
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 0
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 2
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 1
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 0
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 0
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 2
Allomyces_macrogynus_ATCC_38327_ 8
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 6
Entamoeba_dispar_1.2 4
Entamoeba_invadens_1.2 3
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 19
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   21
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10
Gossypium_raimondii_v221 17
Citrus_clementina_v165 5
Citrus_sinensis_v154   (Sweet orange)   5
Thellungiella_halophila_v173 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   8
Arabidopsis_thaliana_10   (Thale cress)   8
Carica_papaya_   (Papaya)   7
Medicago_truncatula_   (Barrel medic)   9
Phaseolus_vulgaris_v186   (French bean)   6
Glycine_max_v109   (Soybean)   13
Cucumis_sativus_v122   (Cucumber)   5
Fragaria_vesca_   (Wild strawberry)   13
Malus_domestica_v196   (Apple)   30
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   10
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   13
Vitis_vinifera_   (Wine grape)   9
Mimulus_guttatus_v140   (Spotted monkey flower)   11
Solanum_lycopersicum_v.2.3   (Tomato)   7
Solanum_tuberosum_   (Potato)   8
Actinidia_chinensis_Hongyang_ 12
Aquilegia_coerulea_v195 18
Triticum_urartu_22 6
Triticum_aestivum_22   (Bread wheat)   19
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   7
Oryza_barthii_22   (African wild rice)   7
Oryza_meridionalis_22 7
Oryza_glumaepatula_22 8
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 11
Oryza_nivara_22 7
Oryza_brachyantha_22   (Malo sina)   6
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10
Oryza_sativa_v193   (Rice)   10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   7
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   6
Musa_acuminata_22   (Wild Malaysian banana)   9
Amborella_trichopoda_22 2
Physcomitrella_patens 12
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 4
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 15
Volvox_carteri_v199 14
Chlamydomonas_reinhardtii_4.0 15
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 5
Bathycoccus_prasinos_ 7
Micromonas_sp._RCC299_ 10
Micromonas_pusilla_CCMP1545_v3.0 16
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 8
Thecamonas_trahens_ATCC_50062_ 16
Bigelowiella_natans_CCMP2755_22 64
Giardia_lamblia_2.3 5
Leishmania_mexicana_2.4 9
Leishmania_major_strain_Friedlin_ 10
Leishmania_infantum_JPCM5_2.4 9
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 9
Trypanosoma_vivax_ 17
Trypanosoma_cruzi_strain_CL_Brener 9
Trypanosoma_congolense_2.4 12
Trypanosoma_brucei_gambiense_v4.1 12
Trypanosoma_brucei_TREU927_v4.1 11
Ectocarpus_siliculosus 44
Aureococcus_anophagefferens_ 40
Albugo_laibachii_22 15
Pythium_iwayamai_DAOM_BR242034_22 37
Pythium_arrhenomanes_ATCC_12531_22 24
Pythium_ultimum_v1.7-2 25
Pythium_aphanidermatum_DAOM_BR444_22 26
Pythium_irregulare_DAOM_BR486_22 36
Pythium_vexans_DAOM_BR484_22 29
Phytophthora_ramorum_1.1   (Sudden oak death agent)   29
Phytophthora_sojae_1.1 29
Phytophthora_infestans_T30-4_ 28
Phytophthora_capsici_ 21
Hyaloperonospora_arabidopsidis_22 6
Phaeodactylum_tricornutumCCAP_1055/1 9
Fragilariopsis_cylindrus 18
Thalassiosira_pseudonana_CCMP1335 14
Perkinsus_marinus_ATCC_50983_ 14
Paramecium_tetraurelia_ 83
Tetrahymena_thermophila_SB210_1_ 44
Ichthyophthirius_multifiliis_strain_G5_ 13
Cryptosporidium_hominis 6
Cryptosporidium_muris 7
Cryptosporidium_parvum_Iowa_II 8
Neospora_caninum 8
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 4
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 15
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 6
Plasmodium_yoelii_ssp._yoelii_1_ 3
Plasmodium_chabaudi_ 3
Plasmodium_berghei_ANKA_ 3
Symbiodinium_minutum_clade_B1_v1.2 156
Naegleria_gruberi_ 3
Trichomonas_vaginalis_ 7
Guillardia_theta_CCMP2712_v1.0_ 58
Emiliania_huxleyi_CCMP1516_ 23
Ruminococcus_albus_7 0
Desulfotomaculum_ruminis_DSM_2154 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Planctomyces_brasiliensis_DSM_5305 1
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 0
Arcobacter_sp._L 1
Arcobacter_butzleri_RM4018 1
Desulfovibrio_salexigens_DSM_2638 2
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_lovleyi_SZ 1
Gallionella_capsiferriformans_ES-2 1
Caulobacter_segnis_ATCC_21756 1
Maricaulis_maris_MCS10 1
Rhodospirillum_photometricum_DSM_122 2
Magnetospirillum_magneticum_AMB-1 1
Methylobacterium_extorquens_AM1 1
Thiocystis_violascens_DSM_198 1
Nitrosococcus_watsonii_C-113 1
Thermococcus_gammatolerans_EJ3 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   23
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   8
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 3
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11
Hordeum_vulgare_22   (Domesticated barley)   14
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8
Trypanosoma_brucei_Lister_427_v4.1 12
Neospora_caninum_Nc-Liverpool_6.2 8
Plasmodium_falciparum_HB3_ 11
Plasmodium_falciparum_Dd2_ 10
Bacillus_cereus_AH820 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_E33L 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Singulisphaera_acidiphila_DSM_18658 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Dickeya_dadantii_3937 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   17
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   13
Pongo_abelii_69_2   (Sumatran orangutan)   8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   17
Otolemur_garnettii_69_3   (Small-eared galago)   11
Microcebus_murinus_69_1   (Gray mouse lemur)   15
Rattus_norvegicus_69_3.4   (Norway rat)   12
Mus_musculus_69_38   (House mouse)   15
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   15
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   16
Cavia_porcellus_69_3   (Domestic guinea pig)   12
Oryctolagus_cuniculus_69_2   (Rabbit)   14
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   14
Sus_scrofa_69_10.2   (Pig)   14
Bos_taurus_69_3.1   (Cattle)   13
Vicugna_pacos_69_1   (Alpaca)   11
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   13
Ailuropoda_melanoleuca_69_1   (Giant panda)   12
Canis_familiaris_69_3.1   (Dog)   16
Felis_catus_69   (Domestic cat)   14
Equus_caballus_69_2   (Horse)   14
Myotis_lucifugus_69_2.0   (Little brown bat)   11
Pteropus_vampyrus_69_1   (Large flying fox)   13
Sorex_araneus_69_1   (European shrew)   13
Erinaceus_europaeus_69   (Western European hedgehog)   14
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   17
Echinops_telfairi_69   (Small Madagascar hedgehog)   13
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_69_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   16
Ornithorhynchus_anatinus_69_5   (Platypus)   11
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   10
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_69_2.0   (Green anole)   13
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   11
Latimeria_chalumnae_69_1   (Coelacanth)   14
Gadus_morhua_69_1   (Atlantic cod)   9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9
Takifugu_rubripes_69_4   (Torafugu)   9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   14
Danio_rerio_69_9   (Zebrafish)   11
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   7
Caenorhabditis_elegans_69_215   (Roundworm)   5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   43
Homo_sapiens__(NCBI_version)   (Human)   24
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   16
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Moniliophthora_perniciosa_FA553__(Genome_survey) 0
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   30
Ricinus_communis__(Early_assembly)   (Castor bean)   10
Nicotiana_benthamiana_0.4.4_(Early_draft) 8
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 1
NCBI_2017_08_genome 11419
TargetDB__(Targets) 36
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2
PDB_chains_(SCOP_1.75)_(PDB) 1
UniProt__viral_sequences_(Viral) 25
NCBI_viral_sequences_(Viral) 5
Protozoadb_2010_08_(Protozoadb) 210
STRING_v9.0.5_(STRING) 822
Uniprot_2018_03_genome 48875

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.