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  Home > SCOP hierarchy > Domain combination - _gap_,47473,_gap_,50911

Domain combinations for _gap_,47473,_gap_,50911 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47473 - EF-hand
50911 - Mannose 6-phosphate receptor domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Papio_anubis_76   (Olive baboon)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Equus_caballus_76_2   (Horse)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Anolis_carolinensis_76_2.0   (Green anole)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Nasonia_vitripennis_   (Jewel wasp)   0
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Sarcoptes_scabiei 0
Meloidogyne_hapla_ 0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Trichinella_spiralis_22 0
Amphimedon_queenslandica 2

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Equus_caballus_69_2   (Horse)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Anolis_carolinensis_69_2.0   (Green anole)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Loa_loa_v3.3_(Request)   (Eye worm)   0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 10
NCBI_2017_08_genome 72
Uniprot_2018_03_genome 684

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.