SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,47676,_gap_,46942,57783 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47676 - Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
46942 - Elongation factor TFIIS domain 2
57783 - Zinc beta-ribbon

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mixia_osmundae_IAM_14324_v1.0 1
Rhodotorula_graminis_WP1_v1.0 1
Thellungiella_halophila_v173 1
Glycine_max_v109   (Soybean)   1
Malus_domestica_v196   (Apple)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Triticum_urartu_22 1
Oryza_nivara_22 0
Musa_balbisiana   (Balbis banana)   1
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 0
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Plasmodium_vivax_SaI-1_7.0 1

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Neospora_caninum_Nc-Liverpool_6.2 1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Protozoadb_2010_08_(Protozoadb) 3
NCBI_2017_08_genome 33
Uniprot_2018_03_genome 518
STRING_v9.0.5_(STRING) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]