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  Home > SCOP hierarchy > Domain combination - _gap_,48065,_gap_,50729

Domain combinations for _gap_,48065,_gap_,50729 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48065 - DBL homology domain (DH-domain)
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Vicugna_pacos_76_1   (Alpaca)   1
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Octopus_bimaculoides_280 0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Daphnia_pulex_   (Common water flea)   0
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   0
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_japonica_ 1
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Schistosoma_mansoni_ 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 0
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   1
Acremonium_alcalophilumv_1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Stagonospora_nodorum_ 0
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_glaucus 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 0
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_invadens_1.2 0
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 0
Phytophthora_infestans_T30-4_ 0
Tetrahymena_thermophila_SB210_1_ 0
Naegleria_gruberi_ 0

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Strains
Genome     Number
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0

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Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Vicugna_pacos_69_1   (Alpaca)   1
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

Others
Genome     Number
Uniprot_2018_03_genome 486
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 2
NCBI_2017_08_genome 96

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.