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Home > SCOP hierarchy > Domain combination - _gap_,48150,55811

Domain combinations for _gap_,48150,55811 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 10

Pan_troglodytes_76_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_76_3.1 (Western gorilla) 2

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 1

Macaca_mulatta_76_1 (Rhesus monkey) 3

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 3

Otolemur_garnettii_76_3 (Small-eared galago) 1

Microcebus_murinus_76_1 (Gray mouse lemur) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 1

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 2

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 1

Equus_caballus_76_2 (Horse) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 1

Erinaceus_europaeus_76 (Western European hedgehog) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Ornithorhynchus_anatinus_76_5 (Platypus) 1

Saccoglossus_kowalevskii_v3.0 1

Gallus_gallus_76_4 (Chicken) 1

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 1

Takifugu_rubripes_76_4 (Torafugu) 1

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 0

Poecilia_formosa_76 (Amazon molly) 0

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 1

Daphnia_pulex_ (Common water flea) 1

Trichinella_spiralis_22 0

Microbotryum_violaceum_22 0

Sphaerobolus_stellatus_v1.0 1

Piloderma_croceum_F_1598_v1.0 0

Serpula_lacrymans_var._lacrymans_S7.9_ 0

Coniophora_puteana 1

Pisolithus_tinctorius_Marx_270_v1.0 1

Scleroderma_citrinum_Foug_A_v1.0 1

Pleurotus_ostreatus_ (Oyster mushroom) 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Gloeophyllum_trabeumv1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 1

Postia_placenta_ 0

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Tremella_mesenterica_ (Witches' butter) 0

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Catenaria_anguillulae_PL171_v1.0 0

Allomyces_macrogynus_ATCC_38327_ 2

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 1

Citrus_clementina_v165 1

Citrus_sinensis_v154 (Sweet orange) 3

Thellungiella_halophila_v173 0

Capsella_rubella_v183 1

Arabidopsis_lyrata_ (Lyrate rockcress) 1

Arabidopsis_thaliana_10 (Thale cress) 0

Carica_papaya_ (Papaya) 1

Medicago_truncatula_ (Barrel medic) 1

Phaseolus_vulgaris_v186 (French bean) 1

Cucumis_sativus_v122 (Cucumber) 2

Prunus_persica_v139 (Peach) 1

Linum_usitatissimum_v200 (Flax) 2

Manihot_esculenta_v147 (Cassava) 1

Populus_trichocarpa_v156 (Black cottonwood) 1

Vitis_vinifera_ (Wine grape) 1

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 1

Actinidia_chinensis_Hongyang_ 1

Aquilegia_coerulea_v195 1

Triticum_aestivum_22 (Bread wheat) 1

Aegilops_tauschii_22 1

Brachypodium_distachyon_ (Stiff brome) 1

Oryza_glumaepatula_22 2

Oryza_glaberrima (African rice) 2

Oryza_punctata_22 1

Oryza_nivara_22 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Panicum_virgatum_v202 (Switchgrass) 2

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 2

Zea_mays_v181 (Maize) 2

Sorghum_bicolor_ (Sorghum) 1

Amborella_trichopoda_22 1

Physcomitrella_patens 1

Chlorella_variabilis_sp._NC64A_ 1

Bathycoccus_prasinos_ 0

Cyanidioschyzon_merolae_strain_10D_22 1

Cyanidioschyzon_merolae 1

Porphyridium_purpureum_02_2012 1

Leishmania_mexicana_2.4 1

Leishmania_major_strain_Friedlin_ 1

Leishmania_infantum_JPCM5_2.4 1

Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0

Trypanosoma_brucei_TREU927_v4.1 1

Ectocarpus_siliculosus 1

Albugo_laibachii_22 1

Pythium_arrhenomanes_ATCC_12531_22 0

Pythium_aphanidermatum_DAOM_BR444_22 0

Phytophthora_sojae_1.1 0

Plasmodium_knowlesi_strain_H_ 1

Symbiodinium_minutum_clade_B1_v1.2 0

Naegleria_gruberi_ 0

Saprospira_grandis_str._Lewin 1

Porphyromonas_gingivalis_ATCC_33277 1

Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1

Myxococcus_fulvus_HW-1 1

Azoarcus_sp._KH32C 1

Cupriavidus_metallidurans_CH34 1

Magnetospirillum_magneticum_AMB-1 1

Gluconobacter_oxydans_621H 1

Methylobacterium_chloromethanicum_CM4 1

Parvibaculum_lavamentivorans_DS-1 1

Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1

Mesorhizobium_loti_MAFF303099 1

Bradyrhizobium_japonicum_USDA_110 1

Aggregatibacter_actinomycetemcomitans_D7S-1 1

Pseudoxanthomonas_spadix_BD-a59 1

Xanthomonas_campestris_pv._campestris_str._B100 1

Serratia_sp._AS12 1

Serratia_plymuthica_AS9 1

Klebsiella_pneumoniae_NTUH-K2044 1

Psychrobacter_sp._PRwf-1 1

Psychrobacter_arcticus_273-4 1

Psychrobacter_cryohalolentis_K5 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 2

Cryptococcus_neoformans_var._grubii_H99_ 0

Cryptococcus_neoformans_B-3501A_ 0

Cryptococcus_neoformans_JEC21_ 0

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 1

Hordeum_vulgare_22 (Domesticated barley) 2

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 2

Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1

Prochlorococcus_marinus_str._MIT_9211 1

Prochlorococcus_marinus_str._MIT_9303 1

Lactobacillus_casei_LOCK919 1

Lactobacillus_rhamnosus_LOCK900 1

Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1

Streptococcus_suis_T15 1

Streptococcus_suis_SS12 1

Streptococcus_suis_A7 1

Streptococcus_suis_JS14 1

Streptococcus_suis_GZ1 1

Streptococcus_suis_98HAH33 1

Streptococcus_suis_05ZYH33 1

Listeria_monocytogenes_serotype_4b_str._LL195 1

Porphyromonas_gingivalis_W83 1

Desulfovibrio_vulgaris_str._'Miyazaki_F' 1

Sorangium_cellulosum_So0157-2 1

Methylobacterium_extorquens_PA1 1

Bradyrhizobium_japonicum_USDA_6 1

Yersinia_pseudotuberculosis_PB1/+ 1

Yersinia_pseudotuberculosis_YPIII 1

Yersinia_pestis_biovar_Microtus_str._91001 1

Yersinia_pestis_KIM10+ 1

Serratia_sp._AS13 1

Serratia_plymuthica_S13 1

Serratia_plymuthica_4Rx13 1

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Felis_catus_69 (Domestic cat) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Pteropus_vampyrus_69_1 (Large flying fox) 1

Erinaceus_europaeus_69 (Western European hedgehog) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Gallus_gallus_69_2 (Chicken) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 1

Takifugu_rubripes_69_4 (Torafugu) 1

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 0

Danio_rerio_69_9 (Zebrafish) 1

Arabidopsis_thaliana_10 (Thale cress) 0

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 11

Homo_sapiens__(NCBI_version) (Human) 6

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Ricinus_communis__(Early_assembly) (Castor bean) 0

Nicotiana_benthamiana_0.4.4_(Early_draft) 1

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

TargetDB__(Targets) 4

Protozoadb_2010_08_(Protozoadb) 6

STRING_v9.0.5_(STRING) 58

Uniprot_2018_03_genome 3744

NCBI_2017_08_genome 928

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Domain combinations for _gap_,48150,55811 superfamilies in groups of genomes