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Domain combinations for _gap_,48295,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48295 - TrpR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Sus_scrofa_76_10.2   (Pig)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Felis_catus_76_6.2   (Domestic cat)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Capitella_sp._I_ 0
Bombyx_mori_   (Domestic silkworm)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Rhodnius_prolixus_22 0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Caenorhabditis_remanei_ 1
Amphimedon_queenslandica 0
Melampsora_laricis-populina_ 1
Malus_domestica_v196   (Apple)   1
Manihot_esculenta_v147   (Cassava)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Actinidia_chinensis_Hongyang_ 1
Thecamonas_trahens_ATCC_50062_ 1
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 1
Slackia_heliotrinireducens_DSM_20476 1
Nocardioides_sp._JS614 1
Corynebacterium_resistens_DSM_45100 1
Arthrobacter_aurescens_TC1 1
Lactobacillus_fermentum_IFO_3956 1
Streptococcus_pneumoniae_P1031 1
Candidatus_Cardinium_hertigii 1
Magnetospirillum_magneticum_AMB-1 2
Xenorhabdus_nematophila_ATCC_19061 5
Pantoea_sp._At-9b 2

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Strains
Genome     Number
Mycoplasma_mycoides_subsp._mycoides_SC_str._PG1 1
Lactobacillus_reuteri_SD2112 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 0
Streptococcus_pneumoniae_gamPNI0373 1
Streptococcus_pneumoniae_70585 1
Gluconobacter_oxydans_H24 2
Sinorhizobium_fredii_USDA_257 1
Bradyrhizobium_sp._BTAi1 1
Escherichia_coli_O103:H2_str._12009 2
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 1
Escherichia_coli_O26:H11_str._11368 3
Escherichia_coli_O127:H6_str._E2348/69 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Sus_scrofa_69_10.2   (Pig)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
NCBI_plasmid_sequences_(Plasmids) 14
STRING_v9.0.5_(STRING) 27
Uniprot_2018_03_genome 1145
NCBI_2017_08_genome 1028

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