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Domain combinations for _gap_,48350,_gap_,48371,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48350 - GTPase activation domain, GAP
48371 - ARM repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   2
Mus_musculus_76_38   (House mouse)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   1
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   2
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Saccoglossus_kowalevskii_v3.0 2
Octopus_bimaculoides_280 5
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 1
Nasonia_vitripennis_   (Jewel wasp)   1
Sarcoptes_scabiei 1
Trichinella_spiralis_22 1
Proterospongia_sp._ATCC_50818_ 1
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 0
Piloderma_croceum_F_1598_v1.0 0
Coniophora_puteana 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Schizophyllum_commune_ 1
Gloeophyllum_trabeumv1.0 1
Magnaporthe_grisea_70-15_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Neurospora_discreta_FGSC_8579_ 0
Verticillium_dahliae_VdLs.17_ 1
Nectria_haematococca_mpVI_ 1
Trichoderma_reesei_1.2 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Yarrowia_lipolytica_CLIB122 1
Spizellomyces_punctatus_DAOM_BR117_ 1

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Strains
Genome     Number
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_JEC21_ 1

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Mus_musculus_69_38   (House mouse)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
NCBI_2017_08_genome 215
STRING_v9.0.5_(STRING) 9
Uniprot_2018_03_genome 2015

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