SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,48371,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48371 - ARM repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   150
Pan_troglodytes_76_2.1.4   (Chimpanzee)   54
Gorilla_gorilla_76_3.1   (Western gorilla)   78
Pongo_abelii_76_2   (Sumatran orangutan)   55
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   66
Papio_anubis_76   (Olive baboon)   64
Macaca_mulatta_76_1   (Rhesus monkey)   77
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   103
Otolemur_garnettii_76_3   (Small-eared galago)   58
Microcebus_murinus_76_1   (Gray mouse lemur)   46
Rattus_norvegicus_76_5.0   (Norway rat)   66
Mus_musculus_76_38   (House mouse)   97
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   47
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   45
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   58
Cavia_porcellus_76_3   (Domestic guinea pig)   56
Oryctolagus_cuniculus_76_2   (Rabbit)   64
Ochotona_princeps_76   (American pika)   50
Tupaia_belangeri_76   (Northern tree shrew)   38
Sus_scrofa_76_10.2   (Pig)   61
Bos_taurus_76_3.1   (Cattle)   59
Ovis_aries_76_3.1   (Sheep)   68
Vicugna_pacos_76_1   (Alpaca)   40
Tursiops_truncatus_76_1   (Bottlenose dolphin)   61
Mustela_putorius_furo_76_1.0   (Domestic ferret)   56
Ailuropoda_melanoleuca_76_1   (Giant panda)   65
Canis_familiaris_76_3.1   (Dog)   82
Felis_catus_76_6.2   (Domestic cat)   58
Equus_caballus_76_2   (Horse)   63
Myotis_lucifugus_76_2.0   (Little brown bat)   59
Pteropus_vampyrus_76_1   (Large flying fox)   49
Sorex_araneus_76_1   (European shrew)   43
Erinaceus_europaeus_76   (Western European hedgehog)   44
Procavia_capensis_76_1   (Cape rock hyrax)   43
Loxodonta_africana_76_3   (African savanna elephant)   81
Echinops_telfairi_76   (Small Madagascar hedgehog)   50
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   59
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   42
Macropus_eugenii_76_1.0   (Tammar wallaby)   35
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   58
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   67
Ornithorhynchus_anatinus_76_5   (Platypus)   36
Saccoglossus_kowalevskii_v3.0 88
Petromyzon_marinus_76_7.0   (Sea lamprey)   20
Meleagris_gallopavo_76_2   (Turkey)   43
Gallus_gallus_76_4   (Chicken)   47
Anas_platyrhynchos_76_1.0   (Mallard)   43
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   51
Ficedula_albicollis_76_1.0   (Collared flycatcher)   50
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   51
Anolis_carolinensis_76_2.0   (Green anole)   50
Xenopus_laevis_   (African clawed frog)   151
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   69
Latimeria_chalumnae_76_1   (Coelacanth)   53
Lepisosteus_oculatus_76   (Spotted gar)   76
Gadus_morhua_76_1   (Atlantic cod)   46
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   72
Takifugu_rubripes_76_4   (Torafugu)   123
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   60
Oryzias_latipes_76_1   (Japanese medaka)   55
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   62
Poecilia_formosa_76   (Amazon molly)   52
Oreochromis_niloticus_76_1.0   (Nile tilapia)   81
Astyanax_mexicanus_76   (Mexican tetra)   53
Danio_rerio_76_9   (Zebrafish)   85
Oikopleura_dioica 26
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   67
Ciona_intestinalis_76   (Vase tunicate)   23
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   41
Adineta_vaga 69
Octopus_bimaculoides_280 52
Crassostrea_gigas_22   (Pacific oyster)   39
Lottia_gigantea_   (Owl limpet)   36
Helobdella_robusta_ 29
Capitella_sp._I_ 47
Danaus_plexippus_OGS1.0   (Monarch butterfly)   31
Heliconius_melpomene_   (Postman butterfly)   22
Bombyx_mori_   (Domestic silkworm)   15
Nasonia_vitripennis_   (Jewel wasp)   37
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   60
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   40
Linepithema_humile_v1.1   (Argentine ant)   42
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   34
Solenopsis_invicta_v.2.2.3   (Red fire ant)   31
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   39
Atta_cephalotes_v1.1 38
Camponotus_floridanus_v3.3   (Florida carpenter ant)   39
Lucilia_cuprina   (Australian sheep blowfly)   36
Drosophila_grimshawi_1.3 42
Drosophila_willistoni_1.3 42
Drosophila_pseudoobscura_2.13 37
Drosophila_persimilis_1.3 33
Drosophila_suzukii 37
Drosophila_yakuba_1.3 42
Drosophila_simulans_1.3 30
Drosophila_sechellia_1.3 38
Drosophila_melanogaster_76_5   (Fruit fly)   85
Drosophila_erecta_1.3 44
Drosophila_ananassae_1.3 36
Drosophila_virilis_1.2 45
Drosophila_mojavensis_1.3 42
Megaselia_scalaris_22 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   46
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38
Anopheles_darlingi_22   (American malaria mosquito)   26
Anopheles_gambiae_49_3j   (African malaria mosquito)   32
Tribolium_castaneum_3.0   (Red flour beetle)   37
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   41
Acyrthosiphon_pisum_   (Pea aphid)   31
Rhodnius_prolixus_22 21
Daphnia_pulex_   (Common water flea)   37
Strigamia_maritima_22 39
Sarcoptes_scabiei 20
Tetranychus_urticae_   (Two-spotted spider mite)   32
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   18
Pristionchus_pacificus_ 18
Meloidogyne_incognita_   (Southern root-knot nematode)   17
Meloidogyne_hapla_ 9
Onchocerca_volvulus_22 34
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   48
Caenorhabditis_japonica_ 31
Caenorhabditis_brenneri_ 46
Caenorhabditis_remanei_ 37
Caenorhabditis_elegans_76_235   (Roundworm)   57
Caenorhabditis_briggsae_2 40
Trichinella_spiralis_22 27
Hymenolepis_microstoma_ 36
Echinococcus_multilocularis_ 42
Echinococcus_granulosus_ 40
Taenia_solium_   (Pork tapeworm)   31
Schistosoma_mansoni_ 38
Mnemiopsis_leidyi   (Sea walnut)   28
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   34
Hydra_vulgaris 24
Amphimedon_queenslandica 33
Trichoplax_adhaerens_ 28
Proterospongia_sp._ATCC_50818_ 45
Monosiga_brevicollis_ 32
Sphaeroforma_arctica_JP610_ 18
Capsaspora_owczarzaki_ATCC_30864_ 46
Conidiobolus_coronatus_NRRL28638_v1.0 31
Mortierella_verticillata_NRRL_6337_ 39
Phycomyces_blakesleeanus_ 44
Rhizopus_oryzae_RA_99-880_ 26
Mucor_circinelloides_ 40
Rhizomucor_miehei_CAU432_ 34
Malassezia_globosa_CBS_7966_ 39
Sporisorium_reilianum_22 37
Ustilago_maydis_ 38
Mixia_osmundae_IAM_14324_v1.0 27
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 30
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 26
Melampsora_laricis-populina_ 27
Rhodotorula_graminis_WP1_v1.0 30
Sporobolomyces_roseus_IAM_13481_ 28
Microbotryum_violaceum_22 32
Wallemia_sebi_v1.0 24
Sphaerobolus_stellatus_v1.0 26
Piloderma_croceum_F_1598_v1.0 35
Serpula_lacrymans_var._lacrymans_S7.9_ 25
Coniophora_puteana 29
Hydnomerulius_pinastri_v2.0 32
Paxillus_rubicundulus_Ve08.2h10_v1.0 29
Pisolithus_microcarpus_441_v1.0 25
Pisolithus_tinctorius_Marx_270_v1.0 32
Scleroderma_citrinum_Foug_A_v1.0 26
Coprinopsis_cinerea_okayama7_130_v3 34
Pleurotus_ostreatus_   (Oyster mushroom)   33
Amanita_thiersii_Skay4041_v1.0 31
Amanita_muscaria_Koide_v1.0   (Fly agaric)   34
Galerina_marginata_v1.0 38
Hebeloma_cylindrosporum_h7_v2.0 32
Laccaria_bicolor_S238N-H82_ 33
Agaricus_bisporus_var._bisporus_ 31
Schizophyllum_commune_ 29
Stereum_hirsutum_FP-91666_SS1__v1.0 34
Heterobasidion_annosum_ 29
Gloeophyllum_trabeumv1.0 33
Punctularia_strigosozonata_v1.0 28
Sebacina_vermifera_MAFF_305830_v1.0 30
Fomitiporia_mediterranea_v1.0 27
Tulasnella_calospora_AL13/4D_v1.0 26
Postia_placenta_ 30
Wolfiporia_cocos_MD-104_SS10__v1.0 30
Fomitopsis_pinicolav1.0 35
Fomitopsis_pinicola_FP-58527_SS1_v3.0 36
Phanerochaete_chrysosporium_RP-78_2.1 28
Dichomitus_squalens 34
Trametes_versicolor_v1.0 30
Tremella_mesenterica_   (Witches' butter)   31
Daldinia_eschscholzii_EC12_v1.0 35
Apiospora_montagnei_NRRL_25634_v1.0 33
Magnaporthe_poae_ATCC_64411_22 29
Magnaporthe_grisea_70-15_ 26
Podospora_anserina_ 37
Sporotrichum_thermophile_ATCC_42464_ 31
Thielavia_terrestris_NRRL_8126_ 32
Chaetomium_globosum_CBS_148.51_ 30
Neurospora_tetrasperma_ 36
Neurospora_discreta_FGSC_8579_ 34
Neurospora_crassa_OR74A_ 31
Cryphonectria_parasitica_   (Chestnut blight fungus)   33
Verticillium_albo-atrum_VaMs.102_ 28
Verticillium_dahliae_VdLs.17_ 33
Acremonium_alcalophilumv_1.0 33
Glomerella_graminicola_22 31
Fusarium_graminearum_ 28
Nectria_haematococca_mpVI_ 35
Fusarium_oxysporum_f._sp._lycopersici_4286_ 30
Fusarium_verticillioides_7600_ 33
Trichoderma_asperellum_CBS_433.97_v1.0 31
Trichoderma_atroviride_ 31
Trichoderma_citrinoviride_v1.0 30
Trichoderma_reesei_1.2 31
Trichoderma_virens_Gv29-8_ 30
Trichoderma_longibrachiatum_ATCC_18648_v1.0 32
Trichoderma_harzianum_CBS_226.95_v1.0 27
Amorphotheca_resinae_v1.0   (Creosote fungus)   31
Botrytis_cinerea_B05.10_ 30
Sclerotinia_sclerotiorum_ 32
Blumeria_graminis_22 30
Didymella_exigua_CBS_183.55_v1.0 33
Leptosphaeria_maculans_22 35
Setosphaeria_turcica_v1.0 31
Cochliobolus_miyabeanus_ATCC_44560_v1.0 32
Cochliobolus_victoriae_FI3_v1.0 31
Cochliobolus_carbonum_26-R-13_v1.0 30
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   39
Alternaria_brassicicola_ 22
Cochliobolus_lunatus_m118_v2.0 30
Pyrenophora_teres_f._teres_22 36
Pyrenophora_tritici-repentis_ 30
Stagonospora_nodorum_ 33
Mycosphaerella_graminicola_IPO323_ 30
Zasmidium_cellare_ATCC_36951_v1.0 31
Dothistroma_septosporum 31
Septoria_musiva_v1.0 28
Mycosphaerella_fijiensis_CIRAD86_ 28
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 31
Paracoccidioides_brasiliensis_Pb18_ 32
Coccidioides_posadasii_RMSCC_3488_ 31
Coccidioides_immitis_RS_ 34
Ajellomyces_dermatitidis_SLH14081_ 28
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 30
Microsporum_canis_CBS_113480_ 28
Trichophyton_equinum_CBS_127.97_ 32
Trichophyton_verrucosum_HKI_0517_ 26
Arthroderma_benhamiae_CBS_112371_ 28
Trichophyton_tonsurans_CBS_112818_ 30
Trichophyton_rubrum_CBS_118892_ 31
Uncinocarpus_reesii_1704_ 25
Aspergillus_zonatus_v1.0 30
Penicillium_chrysogenum_Wisconsin_54-1255_ 27
Penicillium_chrysogenum_v1.0 28
Aspergillus_acidus_v1.0 33
Aspergillus_fumigatus_Af293 29
Aspergillus_brasiliensis_v1.0 29
Aspergillus_nidulans_FGSC_A4_ 36
Aspergillus_sydowii_v1.0 33
Aspergillus_versicolor_v1.0 32
Aspergillus_glaucus 32
Aspergillus_carbonarius_ITEM_5010_ 29
Neosartorya_fischeri_NRRL_181_ 29
Aspergillus_terreus_NIH2624_ 36
Aspergillus_tubingensis_v1.0 29
Aspergillus_wentii_v1.0 32
Aspergillus_oryzae_RIB40_ 30
Aspergillus_niger_22 31
Aspergillus_niger_ATCC_1015_ 26
Aspergillus_flavus_NRRL3357_ 27
Aspergillus_clavatus_NRRL_1_ 30
Penicillium_marneffei_ATCC_18224_ 31
Tuber_melanosporum_Mel28_22 31
Tuber_melanosporum_Vittad_   (Perigord truffle)   32
Hansenula_polymorpha_v2.0 22
Dekkera_bruxellensis_CBS_2499_v2.0 28
Pichia_membranifaciensv1.0 31
Candida_tanzawaensis_NRRL_Y-17324__v1.0 29
Candida_dubliniensis_CD36_ 31
Candida_tropicalis_MYA-3404_ 31
Candida_parapsilosis_ 31
Candida_albicans_SC5314 30
Lodderomyces_elongisporus_NRRL_YB-4239_ 30
Babjeviella_inositovora_NRRL_Y-12698_v1.0 29
Pichia_stipitis_CBS_6054_ 31
Candida_guilliermondii_ATCC_6260_ 27
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 28
Debaromyces_hansenii 30
Wickerhamomyces_anomalus 25
Pichia_pastoris_GS115_ 30
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 18
Yarrowia_lipolytica_CLIB122 29
Candida_lusitaniae_ATCC_42720_ 28
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 29
Vanderwaltozyma_polyspora_DSM_70294_ 30
Candida_glabrata_CBS138 30
Kluyveromyces_thermotolerans_CBS_6340 32
Lachancea_kluyveri_ 28
Kluyveromyces_waltii 29
Ashbya_gossypii_ATCC_10895_ 32
Zygosaccharomyces_rouxii_ 28
Saccharomyces_mikatae_MIT 20
Saccharomyces_paradoxus_MIT 26
Saccharomyces_cerevisiae_76   (Baker's yeast)   31
Saccharomyces_bayanus_MIT 31
Kluyveromyces_lactis 32
Schizosaccharomyces_cryophilus_OY26_22 35
Schizosaccharomyces_octosporus_yFS286_ 31
Schizosaccharomyces_japonicus_yFS275_ 26
Schizosaccharomyces_pombe   (Fission yeast)   33
Catenaria_anguillulae_PL171_v1.0 47
Allomyces_macrogynus_ATCC_38327_ 79
Spizellomyces_punctatus_DAOM_BR117_ 32
Dictyostelium_discoideum 46
Dictyostelium_purpureum_ 43
Entamoeba_dispar_1.2 28
Entamoeba_invadens_1.2 53
Entamoeba_histolytica_1 33
Selaginella_moellendorffii_ 69
Pinus_taeda   (Loblolly pine)   15
Picea_abies   (Norway spruce)   9
Eucalyptus_grandis_v201   (Rose gum)   46
Theobroma_cacao_B97-61/B2_v1   (Cacao)   40
Gossypium_raimondii_v221 173
Citrus_clementina_v165 52
Citrus_sinensis_v154   (Sweet orange)   89
Thellungiella_halophila_v173 62
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   63
Capsella_rubella_v183 53
Arabidopsis_lyrata_   (Lyrate rockcress)   46
Arabidopsis_thaliana_10   (Thale cress)   70
Carica_papaya_   (Papaya)   26
Medicago_truncatula_   (Barrel medic)   84
Phaseolus_vulgaris_v186   (French bean)   43
Glycine_max_v109   (Soybean)   88
Cucumis_sativus_v122   (Cucumber)   56
Fragaria_vesca_   (Wild strawberry)   44
Malus_domestica_v196   (Apple)   70
Prunus_persica_v139   (Peach)   47
Linum_usitatissimum_v200   (Flax)   76
Manihot_esculenta_v147   (Cassava)   49
Populus_trichocarpa_v156   (Black cottonwood)   66
Vitis_vinifera_   (Wine grape)   39
Mimulus_guttatus_v140   (Spotted monkey flower)   48
Solanum_lycopersicum_v.2.3   (Tomato)   47
Solanum_tuberosum_   (Potato)   22
Actinidia_chinensis_Hongyang_ 44
Aquilegia_coerulea_v195 97
Triticum_urartu_22 46
Triticum_aestivum_22   (Bread wheat)   94
Aegilops_tauschii_22 50
Brachypodium_distachyon_   (Stiff brome)   62
Oryza_barthii_22   (African wild rice)   90
Oryza_meridionalis_22 79
Oryza_glumaepatula_22 100
Oryza_glaberrima   (African rice)   49
Oryza_punctata_22 85
Oryza_nivara_22 101
Oryza_brachyantha_22   (Malo sina)   41
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   68
Oryza_sativa_v193   (Rice)   69
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   43
Panicum_virgatum_v202   (Switchgrass)   64
Setaria_italica_v164   (Foxtail millet)   59
Zea_mays_subsp._mays_   (Maize)   54
Zea_mays_v181   (Maize)   59
Sorghum_bicolor_   (Sorghum)   45
Musa_balbisiana   (Balbis banana)   40
Musa_acuminata_22   (Wild Malaysian banana)   43
Amborella_trichopoda_22 42
Physcomitrella_patens 65
Coccomyxa_subellipsoidea_sp._C-169_v2 29
Asterochloris_sp._Cgr/DA1pho_v1.0 26
Chlorella_variabilis_sp._NC64A_ 25
Chlorella_vulgaris_ 26
Volvox_carteri_f._nagariensis_ 44
Volvox_carteri_v199 49
Chlamydomonas_reinhardtii_4.0 31
Ostreococcus_sp._RCC809_ 22
Ostreococcus_lucimarinus_CCE9901_ 29
Ostreococcus_tauri_ 28
Bathycoccus_prasinos_ 34
Micromonas_sp._RCC299_ 33
Micromonas_pusilla_CCMP1545_v3.0 31
Cyanidioschyzon_merolae_strain_10D_22 17
Cyanidioschyzon_merolae 17
Porphyridium_purpureum_02_2012 33
Thecamonas_trahens_ATCC_50062_ 52
Bigelowiella_natans_CCMP2755_22 51
Giardia_lamblia_2.3 17
Cyanophora_paradoxa_ 5
Leishmania_mexicana_2.4 36
Leishmania_major_strain_Friedlin_ 37
Leishmania_infantum_JPCM5_2.4 37
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 38
Trypanosoma_vivax_ 41
Trypanosoma_cruzi_strain_CL_Brener 28
Trypanosoma_congolense_2.4 39
Trypanosoma_brucei_gambiense_v4.1 36
Trypanosoma_brucei_TREU927_v4.1 34
Ectocarpus_siliculosus 38
Aureococcus_anophagefferens_ 21
Albugo_laibachii_22 80
Pythium_iwayamai_DAOM_BR242034_22 39
Pythium_arrhenomanes_ATCC_12531_22 33
Pythium_ultimum_v1.7-2 35
Pythium_aphanidermatum_DAOM_BR444_22 35
Pythium_irregulare_DAOM_BR486_22 52
Pythium_vexans_DAOM_BR484_22 42
Phytophthora_ramorum_1.1   (Sudden oak death agent)   35
Phytophthora_sojae_1.1 36
Phytophthora_infestans_T30-4_ 49
Phytophthora_capsici_ 22
Hyaloperonospora_arabidopsidis_22 36
Phaeodactylum_tricornutumCCAP_1055/1 30
Fragilariopsis_cylindrus 35
Thalassiosira_pseudonana_CCMP1335 31
Perkinsus_marinus_ATCC_50983_ 37
Paramecium_tetraurelia_ 72
Tetrahymena_thermophila_SB210_1_ 58
Ichthyophthirius_multifiliis_strain_G5_ 20
Cryptosporidium_hominis 10
Cryptosporidium_muris 16
Cryptosporidium_parvum_Iowa_II 15
Neospora_caninum 39
Toxoplasma_gondii_VEG 38
Toxoplasma_gondii_ME49 46
Toxoplasma_gondii_GT1 40
Babesia_bovis_T2Bo_ 44
Theileria_parva__ 23
Theileria_annulata 23
Plasmodium_falciparum_3D7_ 26
Plasmodium_vivax_SaI-1_7.0 25
Plasmodium_knowlesi_strain_H_ 27
Plasmodium_yoelii_ssp._yoelii_1_ 17
Plasmodium_chabaudi_ 24
Plasmodium_berghei_ANKA_ 24
Symbiodinium_minutum_clade_B1_v1.2 28
Naegleria_gruberi_ 37
Trichomonas_vaginalis_ 217
Guillardia_theta_CCMP2712_v1.0_ 49
Emiliania_huxleyi_CCMP1516_ 29
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Cyanothece_sp._PCC_8802 1
Calothrix_sp._PCC_7507 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 2
Mycoplasma_bovis_HB0801 0
Mycoplasma_arthritidis_158L3-1 0
Mycoplasma_synoviae_53 1
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 2
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Saccharopolyspora_erythraea_NRRL_2338 1
Kribbella_flavida_DSM_17836 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Rhodococcus_opacus_B4 0
Bifidobacterium_bifidum_S17 1
Herpetosiphon_aurantiacus_DSM_785 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
butyrate-producing_bacterium_SM4/1 2
Eubacterium_eligens_ATCC_27750 1
Clostridium_saccharolyticum_WM1 1
Clostridium_lentocellum_DSM_5427 1
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_cellulovorans_743B 1
Mahella_australiensis_50-1_BON 1
Tetragenococcus_halophilus_NBRC_12172 0
Enterococcus_hirae_ATCC_9790 1
Leuconostoc_sp._C2 1
Lactobacillus_johnsonii_FI9785 1
Streptococcus_gallolyticus_UCN34 1
Streptococcus_equi_subsp._equi_4047 1
Streptococcus_pyogenes_str._Manfredo 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_innocua_Clip11262 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Bacillus_sp._1NLA3E 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_clausii_KSM-K16 0
Macrococcus_caseolyticus_JCSC5402 1
Staphylococcus_lugdunensis_HKU09-01 1
Staphylococcus_haemolyticus_JCSC1435 1
Staphylococcus_aureus_subsp._aureus_JH1 2
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 3
Rhodothermus_marinus_DSM_4252 1
Flexibacter_litoralis_DSM_6794 1
Cyclobacterium_marinum_DSM_745 1
Fibrella_aestuarina 1
Runella_slithyformis_DSM_19594 1
Tannerella_forsythia_ATCC_43037 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Pedobacter_heparinus_DSM_2366 1
Flavobacterium_johnsoniae_UW101 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 1
Thermosipho_melanesiensis_BI429 1
Granulicella_mallensis_MP5ACTX8 0
Geobacter_daltonii_FRC-32 1
Haliangium_ochraceum_DSM_14365 2
Sorangium_cellulosum_'So_ce_56' 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Ralstonia_solanacearum_CFBP2957 2
Burkholderia_gladioli_BSR3 0
Variovorax_paradoxus_S110 1
Rhodomicrobium_vannielii_ATCC_17100 0
Rhodopseudomonas_palustris_BisA53 0
Hahella_chejuensis_KCTC_2396 1
Methylomonas_methanica_MC09 0
Nitrosococcus_halophilus_Nc4 0
Proteus_mirabilis_HI4320 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 1
halophilic_archaeon_DL31 0
Methanosarcina_acetivorans_C2A 0
Methanosarcina_barkeri_str._Fusaro 1
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Haloferax_mediterranei_ATCC_33500 1
Halomicrobium_mukohataei_DSM_12286 0
Methanothermococcus_okinawensis_IH1 1
Methanococcus_maripaludis_C5 0
Methanobrevibacter_ruminantium_M1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   89
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   67
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   38
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   23
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   48
Cryptococcus_neoformans_var._grubii_H99_ 33
Cryptococcus_neoformans_B-3501A_ 34
Cryptococcus_neoformans_JEC21_ 29
Paracoccidioides_brasiliensis_Pb01_ 30
Paracoccidioides_brasiliensis_Pb03_ 32
Coccidioides_posadasii_str._Silveira_ 32
Coccidioides_immitis_RMSCC_3703_ 24
Coccidioides_immitis_RMSCC_2394_ 33
Coccidioides_immitis_H538.4_ 17
Ajellomyces_dermatitidis_ER-3_ 31
Histoplasma_capsulatum_H143 25
Histoplasma_capsulatum_H88 32
Histoplasma_capsulatum_G186AR 30
Aspergillus_fumigatus_A1163_ 26
Candida_albicans_WO-1_ 36
Saccharomyces_cerevisiae_UC5 23
Saccharomyces_cerevisiae_PW5 24
Saccharomyces_cerevisiae_FL100 7
Saccharomyces_cerevisiae_CLIB324 5
Saccharomyces_cerevisiae_CBS7960 16
Saccharomyces_cerevisiae_YJM269 17
Saccharomyces_cerevisiae_T7 30
Saccharomyces_cerevisiae_FostersB 10
Saccharomyces_cerevisiae_FostersO 5
Saccharomyces_cerevisiae_VL3 10
Saccharomyces_cerevisiae_Vin13 13
Saccharomyces_cerevisiae_LalvinQA23 16
Saccharomyces_cerevisiae_AWRI796 10
Saccharomyces_cerevisiae_Sigma1278b 30
Saccharomyces_cerevisiae_W303 29
Saccharomyces_cerevisiae_JAY291 32
Saccharomyces_cerevisiae_AWRI1631 18
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_T73 4
Saccharomyces_cerevisiae_CLIB215 19
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 32
Saccharomyces_cerevisiae_YJM789 32
Saccharomyces_cerevisiae_RM11-1a 29
Saccharomyces_cerevisiae_RM11-1a_ 27
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   31
Schizosaccharomyces_pombe_972h-_ 33
Batrachochytrium_dendrobatidis_JEL423_ 33
Batrachochytrium_dendrobatidis_JAM81_ 30
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   46
Hordeum_vulgare_22   (Domesticated barley)   62
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   58
Trypanosoma_brucei_Lister_427_v4.1 38
Neospora_caninum_Nc-Liverpool_6.2 39
Plasmodium_falciparum_HB3_ 20
Plasmodium_falciparum_Dd2_ 13
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_8801 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Mycoplasma_bovis_Hubei-1 0
Gordonibacter_pamelaeae_7-10-1-b 1
Frankia_sp._EuI1c 1
Streptomyces_venezuelae_ATCC_10712 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 0
Nocardia_brasiliensis_ATCC_700358 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._longum_F8 1
Thermus_thermophilus_HB8 1
Coprococcus_catus_GD/7 1
Roseburia_intestinalis_XB6B4 1
Clostridium_botulinum_A2_str._Kyoto 1
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_V583 2
Lactobacillus_casei_LOCK919 1
Lactobacillus_casei_W56 2
Lactobacillus_casei_LC2W 1
Lactobacillus_casei_BD-II 2
Lactobacillus_casei_BL23 2
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_WCFS1 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1
Streptococcus_constellatus_subsp._pharyngis_C818 1
Streptococcus_constellatus_subsp._pharyngis_C232 1
Streptococcus_anginosus_C238 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 1
Streptococcus_iniae_SF1 1
Streptococcus_pyogenes_A20 1
Streptococcus_pyogenes_MGAS2096 1
Streptococcus_pyogenes_MGAS9429 1
Streptococcus_pyogenes_NZ131 1
Streptococcus_pyogenes_MGAS10394 2
Streptococcus_pyogenes_MGAS315 1
Streptococcus_pyogenes_SSI-1 1
Streptococcus_pyogenes_M1_476 1
Streptococcus_pyogenes_MGAS5005 1
Streptococcus_pneumoniae_SPNA45 1
Streptococcus_pneumoniae_SPN994039 1
Streptococcus_pneumoniae_SPN994038 1
Streptococcus_pneumoniae_SPN034183 1
Streptococcus_pneumoniae_OXC141 1
Streptococcus_pneumoniae_JJA 1
Streptococcus_pneumoniae_670-6B 1
Streptococcus_agalactiae_09mas018883 1
Streptococcus_suis_SC070731 1
Streptococcus_suis_SS12 1
Streptococcus_suis_D12 1
Geobacillus_sp._Y412MC52 1
Bacillus_amyloliquefaciens_XH7 0
Bacillus_amyloliquefaciens_TA208 0
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 3
Bacillus_thuringiensis_YBT-1518 2
Bacillus_thuringiensis_Bt407 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 3
Bacillus_cereus_FRI-35 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_G9842 3
Bacillus_cereus_Q1 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_ATCC_14579 2
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pasteuri_SP1 1
Staphylococcus_lugdunensis_N920143 1
Staphylococcus_aureus_CA-347 1
Staphylococcus_aureus_Bmb9393 1
Staphylococcus_aureus_04-02981 1
Staphylococcus_aureus_RF122 1
Staphylococcus_aureus_subsp._aureus_Z172 1
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_11819-97 1
Staphylococcus_aureus_subsp._aureus_M013 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 1
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_str._Newman 3
Staphylococcus_aureus_subsp._aureus_Mu3 1
Staphylococcus_aureus_subsp._aureus_JH9 2
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1
Rhodothermus_marinus_SG0.5JP17-172 2
Alistipes_shahii_WAL_8301 1
Bacteroides_xylanisolvens_XB1A 1
Singulisphaera_acidiphila_DSM_18658 0
Desulfobacula_toluolica_Tol2 1
Myxococcus_stipitatus_DSM_14675 1
Ralstonia_solanacearum_FQY_4 2
Ralstonia_solanacearum_Po82 2
Ralstonia_solanacearum_PSI07 2
Ralstonia_solanacearum_CMR15 2
Ralstonia_solanacearum_GMI1000 4
Burkholderia_sp._CCGE1001 0
Rhodopseudomonas_palustris_BisB5 0
Proteus_mirabilis_BB2000 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1
Acinetobacter_junii__SH205 1
Halovivax_ruber_XH-70 1
Natronomonas_moolapensis_8.8.11 1
Methanococcus_maripaludis_C7 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   62
Pan_troglodytes_69_2.1.4   (Chimpanzee)   54
Gorilla_gorilla_69_3.1   (Western gorilla)   55
Pongo_abelii_69_2   (Sumatran orangutan)   47
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   54
Macaca_mulatta_69_1   (Rhesus monkey)   48
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   57
Otolemur_garnettii_69_3   (Small-eared galago)   58
Microcebus_murinus_69_1   (Gray mouse lemur)   46
Rattus_norvegicus_69_3.4   (Norway rat)   54
Mus_musculus_69_38   (House mouse)   57
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   47
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   43
Cavia_porcellus_69_3   (Domestic guinea pig)   55
Oryctolagus_cuniculus_69_2   (Rabbit)   59
Ochotona_princeps_69   (American pika)   50
Tupaia_belangeri_69   (Northern tree shrew)   38
Sus_scrofa_69_10.2   (Pig)   54
Bos_taurus_69_3.1   (Cattle)   57
Vicugna_pacos_69_1   (Alpaca)   40
Tursiops_truncatus_69_1   (Bottlenose dolphin)   61
Mustela_putorius_furo_69_1.0   (Domestic ferret)   56
Ailuropoda_melanoleuca_69_1   (Giant panda)   60
Canis_familiaris_69_3.1   (Dog)   64
Felis_catus_69   (Domestic cat)   37
Equus_caballus_69_2   (Horse)   53
Myotis_lucifugus_69_2.0   (Little brown bat)   58
Pteropus_vampyrus_69_1   (Large flying fox)   49
Sorex_araneus_69_1   (European shrew)   43
Erinaceus_europaeus_69   (Western European hedgehog)   44
Procavia_capensis_69_1   (Cape rock hyrax)   43
Loxodonta_africana_69_3   (African savanna elephant)   58
Echinops_telfairi_69   (Small Madagascar hedgehog)   50
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   40
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   42
Macropus_eugenii_69_1.0   (Tammar wallaby)   35
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   48
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   64
Ornithorhynchus_anatinus_69_5   (Platypus)   33
Petromyzon_marinus_69_7.0   (Sea lamprey)   20
Meleagris_gallopavo_69_2   (Turkey)   39
Gallus_gallus_69_2   (Chicken)   49
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   47
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   43
Anolis_carolinensis_69_2.0   (Green anole)   53
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   57
Latimeria_chalumnae_69_1   (Coelacanth)   45
Gadus_morhua_69_1   (Atlantic cod)   46
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   54
Takifugu_rubripes_69_4   (Torafugu)   56
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   51
Oryzias_latipes_69_1   (Japanese medaka)   49
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   62
Oreochromis_niloticus_69_1.0   (Nile tilapia)   63
Danio_rerio_69_9   (Zebrafish)   52
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   23
Ciona_intestinalis_69   (Vase tunicate)   20
Drosophila_melanogaster_69_5   (Fruit fly)   44
Caenorhabditis_elegans_69_215   (Roundworm)   41
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   31
Arabidopsis_thaliana_10   (Thale cress)   51

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   163
Homo_sapiens__(NCBI_version)   (Human)   88
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   55
Loa_loa_v3.3_(Request)   (Eye worm)   29
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   12
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   25
Encephalitozoon_intestinalis__(endoparasite) 8
Encephalitozoon_cuniculi_(endoparasite) 8
Lotus_japonicus__(Early_assembly) 19
Malus_x_domestica_(Duplicate)   (Apple)   70
Ricinus_communis__(Early_assembly)   (Castor bean)   45
Nicotiana_benthamiana_0.4.4_(Early_draft) 67
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   47
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   47
Phoenix_dactylifera__(Early_draft)   (Date palm)   20
Guillardia_theta_(nucleomorph) 1
NCBI_plasmid_sequences_(Plasmids) 24
Protozoadb_2010_08_(Protozoadb) 1236
Protein_Data_Bank_(all_PDB_sequenc) 110
STRING_v9.0.5_(STRING) 4689
Uniprot_2018_03_genome 308430
NCBI_2017_08_genome 64981
Core_Eukaryotic_Genes_458_(CEGMA) 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 161
TargetDB__(Targets) 71
NCBI_viral_sequences_(Viral) 92
UniProt__viral_sequences_(Viral) 58
PDB_chains_(SCOP_1.75)_(PDB) 8

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