SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,48371,_gap_,48371,47212,56112,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48371 - ARM repeat
48371 - ARM repeat
47212 - FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Allomyces_macrogynus_ATCC_38327_ 1
Entamoeba_invadens_1.2 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Trypanosoma_vivax_ 1

Strains
Genome     Number
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Batrachochytrium_dendrobatidis_JEL423_ 1

Longest transcript per gene
Genome     Number
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 3
Uniprot_2018_03_genome 312

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