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  Home > SCOP hierarchy > Domain combination - _gap_,48403

Domain combinations for _gap_,48403 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48403 - Ankyrin repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   68
Pan_troglodytes_76_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_76_3.1   (Western gorilla)   20
Pongo_abelii_76_2   (Sumatran orangutan)   20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   20
Macaca_mulatta_76_1   (Rhesus monkey)   41
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   51
Otolemur_garnettii_76_3   (Small-eared galago)   17
Microcebus_murinus_76_1   (Gray mouse lemur)   15
Rattus_norvegicus_76_5.0   (Norway rat)   18
Mus_musculus_76_38   (House mouse)   28
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   19
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   18
Cavia_porcellus_76_3   (Domestic guinea pig)   17
Oryctolagus_cuniculus_76_2   (Rabbit)   16
Ochotona_princeps_76   (American pika)   15
Tupaia_belangeri_76   (Northern tree shrew)   15
Sus_scrofa_76_10.2   (Pig)   19
Bos_taurus_76_3.1   (Cattle)   17
Ovis_aries_76_3.1   (Sheep)   16
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_76_1   (Giant panda)   16
Canis_familiaris_76_3.1   (Dog)   21
Felis_catus_76_6.2   (Domestic cat)   17
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   14
Pteropus_vampyrus_76_1   (Large flying fox)   15
Sorex_araneus_76_1   (European shrew)   9
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   16
Loxodonta_africana_76_3   (African savanna elephant)   20
Echinops_telfairi_76   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   20
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   17
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   18
Ornithorhynchus_anatinus_76_5   (Platypus)   21
Saccoglossus_kowalevskii_v3.0 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   5
Meleagris_gallopavo_76_2   (Turkey)   12
Gallus_gallus_76_4   (Chicken)   12
Anas_platyrhynchos_76_1.0   (Mallard)   7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   12
Anolis_carolinensis_76_2.0   (Green anole)   12
Xenopus_laevis_   (African clawed frog)   15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   20
Latimeria_chalumnae_76_1   (Coelacanth)   15
Lepisosteus_oculatus_76   (Spotted gar)   23
Gadus_morhua_76_1   (Atlantic cod)   21
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   20
Takifugu_rubripes_76_4   (Torafugu)   41
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   22
Oryzias_latipes_76_1   (Japanese medaka)   14
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   20
Poecilia_formosa_76   (Amazon molly)   18
Oreochromis_niloticus_76_1.0   (Nile tilapia)   20
Astyanax_mexicanus_76   (Mexican tetra)   27
Danio_rerio_76_9   (Zebrafish)   29
Oikopleura_dioica 12
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   38
Adineta_vaga 36
Octopus_bimaculoides_280 22
Crassostrea_gigas_22   (Pacific oyster)   18
Lottia_gigantea_   (Owl limpet)   11
Helobdella_robusta_ 10
Capitella_sp._I_ 15
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   5
Nasonia_vitripennis_   (Jewel wasp)   7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8
Linepithema_humile_v1.1   (Argentine ant)   9
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   12
Solenopsis_invicta_v.2.2.3   (Red fire ant)   8
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7
Atta_cephalotes_v1.1 12
Camponotus_floridanus_v3.3   (Florida carpenter ant)   11
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 7
Drosophila_willistoni_1.3 8
Drosophila_pseudoobscura_2.13 6
Drosophila_persimilis_1.3 7
Drosophila_suzukii 7
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 7
Drosophila_sechellia_1.3 5
Drosophila_melanogaster_76_5   (Fruit fly)   22
Drosophila_erecta_1.3 6
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 4
Megaselia_scalaris_22 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10
Anopheles_darlingi_22   (American malaria mosquito)   5
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   10
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   14
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   38
Strigamia_maritima_22 5
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 7
Meloidogyne_incognita_   (Southern root-knot nematode)   3
Meloidogyne_hapla_ 6
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   5
Caenorhabditis_japonica_ 9
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 3
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   8
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 23
Nematostella_vectensis_1.0   (Starlet sea anemone)   10
Hydra_vulgaris 22
Amphimedon_queenslandica 90
Trichoplax_adhaerens_ 8
Proterospongia_sp._ATCC_50818_ 14
Monosiga_brevicollis_ 14
Sphaeroforma_arctica_JP610_ 14
Capsaspora_owczarzaki_ATCC_30864_ 5
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 5
Rhizopus_oryzae_RA_99-880_ 9
Mucor_circinelloides_ 3
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 0
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 7
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 0
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 7
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 5
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 3
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 2
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 8
Apiospora_montagnei_NRRL_25634_v1.0 24
Magnaporthe_poae_ATCC_64411_22 17
Magnaporthe_grisea_70-15_ 7
Podospora_anserina_ 8
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 14
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   8
Verticillium_albo-atrum_VaMs.102_ 8
Verticillium_dahliae_VdLs.17_ 15
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 8
Fusarium_graminearum_ 14
Nectria_haematococca_mpVI_ 16
Fusarium_oxysporum_f._sp._lycopersici_4286_ 19
Fusarium_verticillioides_7600_ 11
Trichoderma_asperellum_CBS_433.97_v1.0 12
Trichoderma_atroviride_ 11
Trichoderma_citrinoviride_v1.0 4
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 15
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 10
Amorphotheca_resinae_v1.0   (Creosote fungus)   6
Botrytis_cinerea_B05.10_ 9
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 8
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 8
Cochliobolus_victoriae_FI3_v1.0 10
Cochliobolus_carbonum_26-R-13_v1.0 9
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   6
Alternaria_brassicicola_ 10
Cochliobolus_lunatus_m118_v2.0 10
Pyrenophora_teres_f._teres_22 7
Pyrenophora_tritici-repentis_ 13
Stagonospora_nodorum_ 19
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 9
Dothistroma_septosporum 2
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 6
Coccidioides_posadasii_RMSCC_3488_ 7
Coccidioides_immitis_RS_ 9
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7
Microsporum_canis_CBS_113480_ 8
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 5
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 19
Penicillium_chrysogenum_v1.0 11
Aspergillus_acidus_v1.0 8
Aspergillus_fumigatus_Af293 5
Aspergillus_brasiliensis_v1.0 4
Aspergillus_nidulans_FGSC_A4_ 6
Aspergillus_sydowii_v1.0 14
Aspergillus_versicolor_v1.0 11
Aspergillus_glaucus 20
Aspergillus_carbonarius_ITEM_5010_ 7
Neosartorya_fischeri_NRRL_181_ 8
Aspergillus_terreus_NIH2624_ 9
Aspergillus_tubingensis_v1.0 6
Aspergillus_wentii_v1.0 12
Aspergillus_oryzae_RIB40_ 18
Aspergillus_niger_22 11
Aspergillus_niger_ATCC_1015_ 4
Aspergillus_flavus_NRRL3357_ 18
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 7
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   62
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 0
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 0
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 14
Allomyces_macrogynus_ATCC_38327_ 5
Spizellomyces_punctatus_DAOM_BR117_ 5
Dictyostelium_discoideum 11
Dictyostelium_purpureum_ 4
Entamoeba_dispar_1.2 0
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 10
Pinus_taeda   (Loblolly pine)   9
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   19
Theobroma_cacao_B97-61/B2_v1   (Cacao)   5
Gossypium_raimondii_v221 28
Citrus_clementina_v165 16
Citrus_sinensis_v154   (Sweet orange)   19
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   5
Capsella_rubella_v183 6
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Arabidopsis_thaliana_10   (Thale cress)   10
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   9
Phaseolus_vulgaris_v186   (French bean)   10
Glycine_max_v109   (Soybean)   14
Cucumis_sativus_v122   (Cucumber)   13
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   22
Prunus_persica_v139   (Peach)   14
Linum_usitatissimum_v200   (Flax)   10
Manihot_esculenta_v147   (Cassava)   21
Populus_trichocarpa_v156   (Black cottonwood)   14
Vitis_vinifera_   (Wine grape)   8
Mimulus_guttatus_v140   (Spotted monkey flower)   6
Solanum_lycopersicum_v.2.3   (Tomato)   5
Solanum_tuberosum_   (Potato)   7
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 14
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   19
Aegilops_tauschii_22 14
Brachypodium_distachyon_   (Stiff brome)   10
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 8
Oryza_glumaepatula_22 13
Oryza_glaberrima   (African rice)   14
Oryza_punctata_22 10
Oryza_nivara_22 7
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   24
Oryza_sativa_v193   (Rice)   26
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   19
Setaria_italica_v164   (Foxtail millet)   10
Zea_mays_subsp._mays_   (Maize)   9
Zea_mays_v181   (Maize)   14
Sorghum_bicolor_   (Sorghum)   5
Musa_balbisiana   (Balbis banana)   5
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 3
Physcomitrella_patens 6
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 7
Volvox_carteri_v199 10
Chlamydomonas_reinhardtii_4.0 17
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 5
Ostreococcus_tauri_ 10
Bathycoccus_prasinos_ 107
Micromonas_sp._RCC299_ 16
Micromonas_pusilla_CCMP1545_v3.0 27
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 5
Thecamonas_trahens_ATCC_50062_ 40
Bigelowiella_natans_CCMP2755_22 27
Giardia_lamblia_2.3 37
Cyanophora_paradoxa_ 14
Leishmania_mexicana_2.4 3
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 6
Trypanosoma_congolense_2.4 5
Trypanosoma_brucei_gambiense_v4.1 6
Trypanosoma_brucei_TREU927_v4.1 5
Ectocarpus_siliculosus 38
Aureococcus_anophagefferens_ 13
Albugo_laibachii_22 13
Pythium_iwayamai_DAOM_BR242034_22 27
Pythium_arrhenomanes_ATCC_12531_22 25
Pythium_ultimum_v1.7-2 34
Pythium_aphanidermatum_DAOM_BR444_22 27
Pythium_irregulare_DAOM_BR486_22 29
Pythium_vexans_DAOM_BR484_22 19
Phytophthora_ramorum_1.1   (Sudden oak death agent)   21
Phytophthora_sojae_1.1 54
Phytophthora_infestans_T30-4_ 21
Phytophthora_capsici_ 31
Hyaloperonospora_arabidopsidis_22 8
Phaeodactylum_tricornutumCCAP_1055/1 27
Fragilariopsis_cylindrus 28
Thalassiosira_pseudonana_CCMP1335 19
Perkinsus_marinus_ATCC_50983_ 13
Paramecium_tetraurelia_ 92
Tetrahymena_thermophila_SB210_1_ 26
Ichthyophthirius_multifiliis_strain_G5_ 3
Cryptosporidium_hominis 1
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 0
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 169
Naegleria_gruberi_ 24
Trichomonas_vaginalis_ 1102
Guillardia_theta_CCMP2712_v1.0_ 48
Emiliania_huxleyi_CCMP1516_ 39
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Microcystis_aeruginosa_NIES-843 0
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7107 0
Nostoc_sp._PCC_7120 0
Nostoc_sp._PCC_7524 2
Anabaena_sp._90 0
Conexibacter_woesei_DSM_14684 1
Slackia_heliotrinireducens_DSM_20476 1
Nakamurella_multipartita_DSM_44233 1
Stackebrandtia_nassauensis_DSM_44728 0
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 0
Pseudonocardia_dioxanivorans_CB1190 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 2
Microlunatus_phosphovorus_NM-1 1
Actinoplanes_sp._SE50/110 1
Beutenbergia_cavernae_DSM_12333 0
Xylanimonas_cellulosilytica_DSM_15894 1
Arthrobacter_arilaitensis_Re117 1
Herpetosiphon_aurantiacus_DSM_785 0
Marinithermus_hydrothermalis_DSM_14884 1
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Clostridium_cellulolyticum_H10 1
butyrate-producing_bacterium_SS3/4 1
Desulfotomaculum_ruminis_DSM_2154 0
Roseburia_intestinalis 1
Clostridium_sp._BNL1100 1
Acetohalobium_arabaticum_DSM_5501 1
Halothermothrix_orenii_H_168 0
Halanaerobium_praevalens_DSM_2228 0
Exiguobacterium_sp._MH3 1
Exiguobacterium_sp._AT1b 1
Exiguobacterium_sibiricum_255-15 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 1
Paenibacillus_polymyxa_M1 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_clausii_KSM-K16 1
Gemmatimonas_aurantiaca_T-27 1
Chitinophaga_pinensis_DSM_2588 0
Candidatus_Amoebophilus_asiaticus_5a2 9
Candidatus_Cardinium_hertigii 3
Marivirga_tractuosa_DSM_4126 0
Dyadobacter_fermentans_DSM_18053 0
Bacteroides_salanitronis_DSM_18170 1
Solitalea_canadensis_DSM_3403 1
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 1
Owenweeksia_hongkongensis_DSM_17368 0
Krokinobacter_sp._4H-3-7-5 0
Lacinutrix_sp._5H-3-7-4 0
Robiginitalea_biformata_HTCC2501 0
Zobellia_galactanivorans 0
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Capnocytophaga_canimorsus_Cc5 0
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Waddlia_chondrophila_WSU_86-1044 3
Candidatus_Protochlamydia_amoebophila_UWE25 1
Parachlamydia_acanthamoebae_UV-7 5
Simkania_negevensis_Z 1
Phycisphaera_mikurensis_NBRC_102666 0
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 1
Coraliomargarita_akajimensis_DSM_45221 1
Akkermansia_muciniphila_ATCC_BAA-835 1
Fretibacterium_fastidiosum 2
Turneriella_parva_DSM_21527 3
Leptospira_interrogans_serovar_Lai_str._IPAV 2
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 5
Brachyspira_murdochii_DSM_12563 7
Brachyspira_intermedia_PWS/A 13
Brachyspira_pilosicoli_95/1000 1
Brachyspira_hyodysenteriae_WA1 14
Borrelia_garinii_PBi 1
Borrelia_bissettii_DN127 1
Borrelia_afzelii_PKo 1
Borrelia_burgdorferi_B31 1
Borrelia_recurrentis_A1 1
Borrelia_duttonii_Ly 1
Borrelia_hermsii_DAH 0
Spirochaeta_smaragdinae_DSM_11293 1
Sphaerochaeta_globus_str._Buddy 0
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 0
Treponema_brennaborense_DSM_12168 1
Treponema_succinifaciens_DSM_2489 2
Treponema_denticola_ATCC_35405 2
Spirochaeta_africana_DSM_8902 1
Spirochaeta_thermophila_DSM_6192 1
Deferribacter_desulfuricans_SSM1 0
Mesotoga_prima_MesG1.Ag.4.2 0
Elusimicrobium_minutum_Pei191 1
Candidatus_Solibacter_usitatus_Ellin6076 3
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 2
Candidatus_Koribacter_versatilis_Ellin345 0
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Bacteriovorax_marinus_SJ 1
Sulfurospirillum_deleyianum_DSM_6946 2
Arcobacter_nitrofigilis_DSM_7299 0
Arcobacter_butzleri_RM4018 0
Campylobacter_hominis_ATCC_BAA-381 1
Campylobacter_lari_RM2100 1
Campylobacter_curvus_525.92 2
Campylobacter_concisus_13826 1
Campylobacter_jejuni_subsp._doylei_269.97 1
Campylobacter_sp._03-427 1
Campylobacter_fetus_subsp._fetus_82-40 1
Helicobacter_hepaticus_ATCC_51449 2
Helicobacter_cinaedi_PAGU611 1
Syntrophus_aciditrophicus_SB 1
Desulfomonile_tiedjei_DSM_6799 6
Syntrophobacter_fumaroxidans_MPOB 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 0
Desulfococcus_oleovorans_Hxd3 0
Desulfovibrio_salexigens_DSM_2638 2
Geobacter_sp._M21 0
Geobacter_uraniireducens_Rf4 1
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 1
Babela_massiliensis 60
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 0
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 1
Chromobacterium_violaceum_ATCC_12472 1
Burkholderia_rhizoxinica_HKI_454 2
Burkholderia_xenovorans_LB400 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_cenocepacia_HI2424 0
Burkholderia_vietnamiensis_G4 1
Burkholderia_glumae_BGR1 1
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Rhodoferax_ferrireducens_T118 1
Collimonas_fungivorans_Ter331 1
Achromobacter_xylosoxidans_A8 0
Achromobacter_xylosoxidans 0
Thiobacillus_denitrificans_ATCC_25259 1
Nitrosomonas_sp._Is79A3 1
Gallionella_capsiferriformans_ES-2 1
Methylotenera_mobilis_JLW8 1
Methylovorus_sp._MP688 1
Methylovorus_glucosetrophus_SIP3-4 1
Methylobacillus_flagellatus_KT 1
Magnetococcus_marinus_MC-1 0
Caulobacter_sp._K31 1
Caulobacter_crescentus_NA1000 1
Caulobacter_segnis_ATCC_21756 1
Maricaulis_maris_MCS10 2
Phaeobacter_gallaeciensis_2.10 1
Pseudovibrio_sp._FO-BEG1 0
Jannaschia_sp._CCS1 0
Ruegeria_sp._TM1040 1
Ruegeria_pomeroyi_DSS-3 0
Magnetospirillum_magneticum_AMB-1 1
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 1
Candidatus_Midichloria_mitochondrii_IricVA 3
Neorickettsia_sennetsu_str._Miyayama 0
Neorickettsia_risticii_str._Illinois 0
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 2
Wolbachia_sp._wRi 1
Ehrlichia_chaffeensis_str._Arkansas 1
Ehrlichia_canis_str._Jake 0
Ehrlichia_ruminantium_str._Gardel 0
Anaplasma_phagocytophilum_HZ 1
Anaplasma_marginale_str._Florida 1
Anaplasma_centrale_str._Israel 1
Orientia_tsutsugamushi_str._Boryong 0
Rickettsia_bellii_OSU_85-389 2
Rickettsia_canadensis_str._McKiel 1
Rickettsia_typhi_str._Wilmington 1
Rickettsia_prowazekii_str._BuV67-CWPP 1
Rickettsia_philipii_str._364D 1
Rickettsia_heilongjiangensis_054 1
Rickettsia_peacockii_str._Rustic 1
Rickettsia_felis_URRWXCal2 3
Rickettsia_slovaca_13-B 1
Rickettsia_parkeri_str._Portsmouth 2
Rickettsia_massiliae_MTU5 2
Rickettsia_japonica_YH 1
Rickettsia_africae_ESF-5 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 3
Rickettsia_montanensis_str._OSU_85-930 1
Candidatus_Rickettsia_amblyommii_str._GAT-30V 2
Rickettsia_australis_str._Cutlack 1
Rickettsia_akari_str._Hartford 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1
Rickettsia_conorii_str._Malish_7 1
Sinorhizobium_medicae_WSM419 0
Agrobacterium_radiobacter_K84 0
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Hyphomicrobium_denitrificans_ATCC_51888 0
Cellvibrio_japonicus_Ueda107 0
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 0
Shewanella_woodyi_ATCC_51908 2
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 0
Shewanella_violacea_DSS12 0
Shewanella_frigidimarina_NCIMB_400 1
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_haloplanktis_TAC125 1
Marinobacter_adhaerens_HP15 1
Hahella_chejuensis_KCTC_2396 1
Alcanivorax_borkumensis_SK2 0
Rhodanobacter_denitrificans 0
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_spadix_BD-a59 0
Pseudoxanthomonas_suwonensis_11-1 0
Stenotrophomonas_maltophilia_K279a 1
Xylella_fastidiosa_M23 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Halorhodospira_halophila_SL1 0
Thiocystis_violascens_DSM_198 1
Coxiella_burnetii_Dugway_5J108-111 1
Legionella_longbeachae_NSW150 4
Legionella_pneumophila_str._Corby 2
Dickeya_zeae_Ech1591 1
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Shigella_sonnei_Ss046 2
Shigella_dysenteriae_Sd197 2
Shigella_boydii_CDC_3083-94 2
Pseudomonas_protegens_Pf-5 1
Francisella_cf._novicida_3523 2
Francisella_novicida_U112 1
Pyrobaculum_oguniense_TE7 2
Methanocella_paludicola_SANAE 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   28
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   21
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 6
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 6
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 7
Coccidioides_immitis_H538.4_ 7
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 6
Histoplasma_capsulatum_H88 5
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 5
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11
Hordeum_vulgare_22   (Domesticated barley)   15
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   18
Trypanosoma_brucei_Lister_427_v4.1 6
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 1
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7425 0
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 0
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Anabaena_cylindrica_PCC_7122 0
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 1
Chthonomonas_calidirosea_T49 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Exiguobacterium_antarcticum_B7 1
Paenibacillus_sp._Y412MC10 0
Paenibacillus_polymyxa_SC2 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_cereus_FRI-35 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Psychroflexus_torquis_ATCC_700755 0
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 2
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 4
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 5
Brachyspira_pilosicoli_WesB 2
Brachyspira_pilosicoli_B2904 4
Brachyspira_pilosicoli_P43/6/78 3
Borrelia_valaisiana_VS116 1
Borrelia_garinii_BgVir 1
Borrelia_afzelii_PKo 1
Borrelia_burgdorferi_JD1 1
Borrelia_burgdorferi_N40 1
Borrelia_burgdorferi_ZS7 1
Treponema_pedis_str._T_A4 1
Spirochaeta_thermophila_DSM_6578 1
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 1
Campylobacter_jejuni_RM1221 1
Campylobacter_jejuni_subsp._jejuni_00-2544 1
Campylobacter_jejuni_subsp._jejuni_00-2538 1
Campylobacter_jejuni_subsp._jejuni_00-2426 1
Campylobacter_jejuni_subsp._jejuni_00-2425 1
Campylobacter_jejuni_subsp._jejuni_PT14 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1
Campylobacter_jejuni_subsp._jejuni_S3 1
Campylobacter_jejuni_subsp._jejuni_M1 1
Campylobacter_jejuni_subsp._jejuni_IA3902 1
Campylobacter_jejuni_subsp._jejuni_81116 1
Campylobacter_jejuni_subsp._jejuni_81-176 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 1
Campylobacter_coli_76339 1
Campylobacter_coli_CVM_N29710 1
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sulfurreducens_PCA 1
Myxococcus_stipitatus_DSM_14675 2
Pandoraea_pnomenusa_3kgm 1
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_lata 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Burkholderia_cenocepacia_J2315 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Variovorax_paradoxus_EPS 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Nitrosomonas_sp._AL212 1
Caulobacter_crescentus_CB15 1
Phaeobacter_gallaeciensis_DSM_17395 1
Micavibrio_aeruginosavorus_EPB 0
Wolbachia_endosymbiont_of_Drosophila_melanogaster 4
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 4
Ehrlichia_muris_AS145 0
Ehrlichia_ruminantium_str._Welgevonden 0
Ehrlichia_ruminantium_str._Welgevonden 0
Anaplasma_phagocytophilum_str._Dog2 1
Anaplasma_phagocytophilum_str._HZ2 1
Anaplasma_phagocytophilum_str._JM 1
Anaplasma_marginale_str._Gypsy_Plains 1
Anaplasma_marginale_str._St._Maries 1
Orientia_tsutsugamushi_str._Ikeda 0
Rickettsia_bellii_RML369-C 1
Rickettsia_canadensis_str._CA410 1
Rickettsia_typhi_str._B9991CWPP 1
Rickettsia_typhi_str._TH1527 1
Rickettsia_prowazekii_str._Breinl 1
Rickettsia_prowazekii_str._NMRC_Madrid_E 1
Rickettsia_prowazekii_str._RpGvF24 1
Rickettsia_prowazekii_str._GvV257 1
Rickettsia_prowazekii_str._Dachau 1
Rickettsia_prowazekii_str._Katsinyian 1
Rickettsia_prowazekii_str._Chernikova 1
Rickettsia_prowazekii_Rp22 1
Rickettsia_prowazekii_str._Madrid_E 1
Rickettsia_slovaca_str._D-CWPP 2
Rickettsia_massiliae_str._AZT80 1
Rickettsia_rickettsii_str._Arizona 1
Rickettsia_rickettsii_str._Brazil 1
Rickettsia_rickettsii_str._Hauke 1
Rickettsia_rickettsii_str._Colombia 1
Rickettsia_rickettsii__str._Hlp#2 1
Rickettsia_rickettsii_str._Hino 1
Rickettsia_rickettsii_str._Iowa 1
Sinorhizobium_meliloti_Rm41 0
Rhizobium_tropici_CIAT_899 0
Rhodopseudomonas_palustris_TIE-1 0
Vibrio_fischeri_ES114 0
Vibrio_sp._EJY3 0
Vibrio_vulnificus_CMCP6 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS155 1
Alteromonas_macleodii_ATCC_27126 0
Thalassolituus_oleivorans_MIL-1 0
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 2
Stenotrophomonas_maltophilia_R551-3 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_M12 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Thioalkalivibrio_nitratireducens_DSM_14787 0
Coxiella_burnetii_CbuK_Q154 2
Coxiella_burnetii_CbuG_Q212 1
Coxiella_burnetii_RSA_331 2
Coxiella_burnetii_RSA_493 1
Legionella_pneumophila_str._Paris 2
Legionella_pneumophila_str._Lens 4
Legionella_pneumophila_subsp._pneumophila_LPE509 3
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 3
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 3
Legionella_pneumophila_subsp._pneumophila 3
Legionella_pneumophila_subsp._pneumophila 3
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 3
Legionella_pneumophila_2300/99_Alcoy 2
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 0
Shigella_sonnei_53G 2
Shigella_flexneri_2002017 3
Shigella_flexneri_2a_str._301 2
Shigella_dysenteriae_1617 2
Shigella_boydii_Sb227 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Escherichia_coli_O7:K1_str._CE10 1
Escherichia_coli_P12b 1
Escherichia_coli_042 1
Escherichia_coli_Xuzhou21 1
Escherichia_coli_UMNK88 1
Escherichia_coli_IAI39 1
Escherichia_coli_UMN026 1
Escherichia_coli_DH1 1
Escherichia_coli_DH1 1
Escherichia_coli_SMS-3-5 1
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 1
Escherichia_coli_O157:H7_str._TW14359 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_protegens_CHA0 2
Acinetobacter_baumannii_D1279779 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   17
Pan_troglodytes_69_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_69_3.1   (Western gorilla)   14
Pongo_abelii_69_2   (Sumatran orangutan)   17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   19
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   20
Otolemur_garnettii_69_3   (Small-eared galago)   17
Microcebus_murinus_69_1   (Gray mouse lemur)   15
Rattus_norvegicus_69_3.4   (Norway rat)   19
Mus_musculus_69_38   (House mouse)   17
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   17
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   14
Ochotona_princeps_69   (American pika)   15
Tupaia_belangeri_69   (Northern tree shrew)   15
Sus_scrofa_69_10.2   (Pig)   16
Bos_taurus_69_3.1   (Cattle)   16
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_69_1   (Giant panda)   16
Canis_familiaris_69_3.1   (Dog)   17
Felis_catus_69   (Domestic cat)   11
Equus_caballus_69_2   (Horse)   10
Myotis_lucifugus_69_2.0   (Little brown bat)   14
Pteropus_vampyrus_69_1   (Large flying fox)   15
Sorex_araneus_69_1   (European shrew)   9
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   16
Loxodonta_africana_69_3   (African savanna elephant)   17
Echinops_telfairi_69   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   17
Ornithorhynchus_anatinus_69_5   (Platypus)   18
Petromyzon_marinus_69_7.0   (Sea lamprey)   5
Meleagris_gallopavo_69_2   (Turkey)   11
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   10
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_69_2.0   (Green anole)   9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_69_1   (Coelacanth)   12
Gadus_morhua_69_1   (Atlantic cod)   18
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   14
Takifugu_rubripes_69_4   (Torafugu)   17
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18
Oryzias_latipes_69_1   (Japanese medaka)   13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   20
Oreochromis_niloticus_69_1.0   (Nile tilapia)   16
Danio_rerio_69_9   (Zebrafish)   18
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   8
Drosophila_melanogaster_69_5   (Fruit fly)   6
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   5

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   70
Homo_sapiens__(NCBI_version)   (Human)   28
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   17
Loa_loa_v3.3_(Request)   (Eye worm)   7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   22
Ricinus_communis__(Early_assembly)   (Castor bean)   5
Nicotiana_benthamiana_0.4.4_(Early_draft) 12
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   5
Phoenix_dactylifera__(Early_draft)   (Date palm)   3
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1
NCBI_plasmid_sequences_(Plasmids) 61
Protozoadb_2010_08_(Protozoadb) 2313
STRING_v9.0.5_(STRING) 2321
Protein_Data_Bank_(all_PDB_sequenc) 44
Uniprot_2018_03_genome 62649
NCBI_2017_08_genome 26693
UniProt__viral_sequences_(Viral) 66
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 10
NCBI_viral_sequences_(Viral) 174
TargetDB__(Targets) 52
PDB_chains_(SCOP_1.75)_(PDB) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.