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Domain combinations for _gap_,48452,_gap_,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48452 - TPR-like
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   1
Mus_musculus_76_38   (House mouse)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Ochotona_princeps_76   (American pika)   1
Vicugna_pacos_76_1   (Alpaca)   1
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Latimeria_chalumnae_76_1   (Coelacanth)   2
Takifugu_rubripes_76_4   (Torafugu)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Drosophila_grimshawi_1.3 1
Drosophila_suzukii 0
Drosophila_mojavensis_1.3 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   1
Caenorhabditis_remanei_ 1
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 0
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   1
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 1
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 0
Fomitiporia_mediterranea_v1.0 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Dichomitus_squalens 2
Trametes_versicolor_v1.0 2
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Cochliobolus_lunatus_m118_v2.0 1
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_wentii_v1.0 0
Aspergillus_flavus_NRRL3357_ 0
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 1
Candida_parapsilosis_ 0
Pichia_stipitis_CBS_6054_ 0
Candida_guilliermondii_ATCC_6260_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Candida_lusitaniae_ATCC_42720_ 0
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   2
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 0
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Medicago_truncatula_   (Barrel medic)   1
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   1
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_punctata_22 1
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   0
Physcomitrella_patens 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 1
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 0
Phytophthora_sojae_1.1 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_chabaudi_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 1
Emiliania_huxleyi_CCMP1516_ 0
Trichodesmium_erythraeum_IMS101 0
Catenulispora_acidiphila_DSM_44928 1
Roseiflexus_sp._RS-1 0
Selenomonas_sputigena_ATCC_35185 0
Pelodictyon_phaeoclathratiforme_BU-1 0
Chlorobium_phaeobacteroides_DSM_266 0
Chitinophaga_pinensis_DSM_2588 0
Spirosoma_linguale_DSM_74 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Fluviicola_taffensis_DSM_16823 0
Isosphaera_pallida_ATCC_43644 0
Rhodopirellula_baltica_SH_1 1
Sphaerochaeta_pleomorpha_str._Grapes 1
Desulfurispirillum_indicum_S5 1
Denitrovibrio_acetiphilus_DSM_12809 1
Candidatus_Chloracidobacterium_thermophilum_B 0
Granulicella_mallensis_MP5ACTX8 0
Bdellovibrio_bacteriovorus_HD100 0
Helicobacter_mustelae_12198 1
Desulfovibrio_magneticus_RS-1 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_sp._Fw109-5 1
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Methanococcoides_burtonii_DSM_6242 0

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Strains
Genome     Number
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb03_ 0
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Bdellovibrio_exovorus_JSS 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Campylobacter_jejuni_subsp._jejuni_PT14 1
Campylobacter_jejuni_subsp._jejuni_S3 1
Anaeromyxobacter_sp._K 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 0
Burkholderia_pseudomallei_1710b 0

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Longest transcript per gene
Genome     Number
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   1
Mus_musculus_69_38   (House mouse)   0
Ochotona_princeps_69   (American pika)   1
Vicugna_pacos_69_1   (Alpaca)   1
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Protozoadb_2010_08_(Protozoadb) 9
STRING_v9.0.5_(STRING) 30
NCBI_2017_08_genome 366
Uniprot_2018_03_genome 3430

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