SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,48508,48508 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48508 - Nuclear receptor ligand-binding domain
48508 - Nuclear receptor ligand-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   1
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Gadus_morhua_76_1   (Atlantic cod)   0
Pristionchus_pacificus_ 0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 1
Schistosoma_mansoni_ 0

Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   1
Felis_catus_69   (Domestic cat)   1
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   2
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Gadus_morhua_69_1   (Atlantic cod)   0

Others
Genome     Number
NCBI_2017_08_genome 4
Uniprot_2018_03_genome 90
STRING_v9.0.5_(STRING) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]