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  Home > SCOP hierarchy > Domain combination - _gap_,48726

Domain combinations for _gap_,48726 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48726 - Immunoglobulin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   61
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_76_3.1   (Western gorilla)   13
Pongo_abelii_76_2   (Sumatran orangutan)   7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   13
Papio_anubis_76   (Olive baboon)   19
Macaca_mulatta_76_1   (Rhesus monkey)   16
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   20
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   15
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   12
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   13
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   11
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   10
Ovis_aries_76_3.1   (Sheep)   26
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   12
Felis_catus_76_6.2   (Domestic cat)   9
Equus_caballus_76_2   (Horse)   8
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   4
Loxodonta_africana_76_3   (African savanna elephant)   13
Echinops_telfairi_76   (Small Madagascar hedgehog)   17
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   57
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_76_5   (Platypus)   23
Saccoglossus_kowalevskii_v3.0 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   5
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_76_1   (Coelacanth)   10
Lepisosteus_oculatus_76   (Spotted gar)   29
Gadus_morhua_76_1   (Atlantic cod)   6
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5
Takifugu_rubripes_76_4   (Torafugu)   8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   9
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   57
Astyanax_mexicanus_76   (Mexican tetra)   13
Danio_rerio_76_9   (Zebrafish)   41
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   11
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 10
Octopus_bimaculoides_280 8
Crassostrea_gigas_22   (Pacific oyster)   16
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 12
Capitella_sp._I_ 12
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8
Heliconius_melpomene_   (Postman butterfly)   13
Bombyx_mori_   (Domestic silkworm)   16
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   15
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   11
Solenopsis_invicta_v.2.2.3   (Red fire ant)   14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7
Atta_cephalotes_v1.1 16
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 5
Drosophila_suzukii 1
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   15
Anopheles_darlingi_22   (American malaria mosquito)   10
Anopheles_gambiae_49_3j   (African malaria mosquito)   6
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 11
Daphnia_pulex_   (Common water flea)   8
Strigamia_maritima_22 10
Sarcoptes_scabiei 8
Tetranychus_urticae_   (Two-spotted spider mite)   5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   9
Pristionchus_pacificus_ 6
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 5
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 4
Caenorhabditis_elegans_76_235   (Roundworm)   7
Caenorhabditis_briggsae_2 3
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   8
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   5
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 19
Nematostella_vectensis_1.0   (Starlet sea anemone)   8
Hydra_vulgaris 7
Amphimedon_queenslandica 6
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Chlamydomonas_reinhardtii_4.0 0
Ectocarpus_siliculosus 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Anabaena_variabilis_ATCC_29413 0
Conexibacter_woesei_DSM_14684 0
Olsenella_uli_DSM_7084 0
Streptomyces_violaceusniger_Tu_4113 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 0
Salinispora_arenicola_CNS-205 0
Dehalogenimonas_lykanthroporepellens_BL-DC-9 0
Desulfitobacterium_hafniense_Y51 0
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_ruminis_DSM_2154 0
Eubacterium_eligens_ATCC_27750 0
Heliobacterium_modesticaldum_Ice1 0
Clostridium_cellulovorans_743B 0
Streptococcus_agalactiae_A909 0
Haliscomenobacter_hydrossis_DSM_1100 0
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Flexibacter_litoralis_DSM_6794 0
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Porphyromonas_asaccharolytica_DSM_20707 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 0
Sphingobacterium_sp._21 0
Fluviicola_taffensis_DSM_16823 0
Lacinutrix_sp._5H-3-7-4 0
Maribacter_sp._HTCC2170 0
Robiginitalea_biformata_HTCC2501 0
Zobellia_galactanivorans 0
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 0
Polaribacter_sp._MED152 0
Capnocytophaga_canimorsus_Cc5 0
Flavobacterium_indicum_GPTSA100-9 0
Opitutus_terrae_PB90-1 0
Treponema_primitia_ZAS-2 0
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 0
Terriglobus_saanensis_SP1PR4 0
Bdellovibrio_bacteriovorus_HD100 0
Babela_massiliensis 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Stigmatella_aurantiaca_DW4/3-1 0
Burkholderia_gladioli_BSR3 0
Pseudoalteromonas_sp._SM9913 0
Hahella_chejuensis_KCTC_2396 0
Legionella_longbeachae_NSW150 0
gamma_proteobacterium_HdN1 0
Shigella_boydii_CDC_3083-94 1
Klebsiella_oxytoca_E718 1
Sulfolobus_tokodaii_str._7 0
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 0
Methanosaeta_concilii_GP6 0
Methanoplanus_petrolearius_DSM_11571 0
Thermococcus_gammatolerans_EJ3 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   17
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7
Corynebacterium_argentoratense_DSM_44202 0
Actinomyces_odontolyticus_ATCC_17982 0
Deinococcus_peraridilitoris_DSM_19664 0
Ruminococcus_champanellensis_18P13 0
Desulfitobacterium_hafniense_DCB-2 0
Clostridium_saccharobutylicum_DSM_13864 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_agalactiae_GD201008-001 0
Emticicia_oligotrophica_DSM_17448 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 0
Raoultella_ornithinolytica_B6 1
Shigella_boydii_Sb227 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 2
Klebsiella_pneumoniae_CG43 1
Klebsiella_pneumoniae_KCTC_2242 1
Enterobacter_aerogenes_EA1509E 1
Escherichia_coli_E._coli_PMV-1 1
Escherichia_coli_JJ1886 2
Escherichia_coli_O7:K1_str._CE10 2
Escherichia_coli_NA114 2
Escherichia_coli_042 1
Escherichia_coli_Xuzhou21 3
Escherichia_coli_IHE3034 1
Escherichia_coli_UMNK88 1
Escherichia_coli_ABU_83972 1
Escherichia_coli_ED1a 3
Escherichia_coli_SMS-3-5 1
Escherichia_coli_APEC_O1 1
Escherichia_coli_O103:H2_str._12009 3
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 2
Escherichia_coli_O26:H11_str._11368 4
Escherichia_coli_O111:H-_str._11128 5
Escherichia_coli_O127:H6_str._E2348/69 1
Escherichia_coli_O157:H7_str._TW14359 4
Escherichia_coli_O157:H7_str._EC4115 2
Escherichia_coli_O157:H7_str._Sakai 4
Escherichia_coli_O157:H7_str._EDL933 5

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   8
Pongo_abelii_69_2   (Sumatran orangutan)   7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   9
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   4
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   13
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   11
Sus_scrofa_69_10.2   (Pig)   11
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   11
Equus_caballus_69_2   (Horse)   8
Myotis_lucifugus_69_2.0   (Little brown bat)   14
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   4
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   17
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   22
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9
Latimeria_chalumnae_69_1   (Coelacanth)   8
Gadus_morhua_69_1   (Atlantic cod)   6
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   6
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   54
Danio_rerio_69_9   (Zebrafish)   19
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   9
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   7

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   62
Homo_sapiens__(NCBI_version)   (Human)   24
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 17
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 0
Protein_Data_Bank_(all_PDB_sequenc) 39
NCBI_viral_sequences_(Viral) 57
PDB_chains_(SCOP_1.75)_(PDB) 1
UniProt__viral_sequences_(Viral) 208
STRING_v9.0.5_(STRING) 344
Uniprot_2018_03_genome 14628
NCBI_2017_08_genome 10015

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.