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  Home > SCOP hierarchy > Domain combination - _gap_,48726,111418,_gap_

Domain combinations for _gap_,48726,111418,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48726 - Immunoglobulin
111418 - Hormone receptor domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Bombyx_mori_   (Domestic silkworm)   1
Rhodnius_prolixus_22 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0

Longest transcript per gene
Genome     Number
Ornithorhynchus_anatinus_69_5   (Platypus)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 279
NCBI_2017_08_genome 77

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.