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  Home > SCOP hierarchy > Domain combination - _gap_,48726,_gap_

Domain combinations for _gap_,48726,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48726 - Immunoglobulin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   84
Pan_troglodytes_76_2.1.4   (Chimpanzee)   25
Gorilla_gorilla_76_3.1   (Western gorilla)   33
Pongo_abelii_76_2   (Sumatran orangutan)   20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   26
Papio_anubis_76   (Olive baboon)   32
Macaca_mulatta_76_1   (Rhesus monkey)   41
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   43
Otolemur_garnettii_76_3   (Small-eared galago)   18
Microcebus_murinus_76_1   (Gray mouse lemur)   21
Rattus_norvegicus_76_5.0   (Norway rat)   45
Mus_musculus_76_38   (House mouse)   37
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   24
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   17
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   30
Cavia_porcellus_76_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_76_2   (Rabbit)   28
Ochotona_princeps_76   (American pika)   18
Tupaia_belangeri_76   (Northern tree shrew)   16
Sus_scrofa_76_10.2   (Pig)   29
Bos_taurus_76_3.1   (Cattle)   26
Ovis_aries_76_3.1   (Sheep)   36
Vicugna_pacos_76_1   (Alpaca)   12
Tursiops_truncatus_76_1   (Bottlenose dolphin)   24
Mustela_putorius_furo_76_1.0   (Domestic ferret)   31
Ailuropoda_melanoleuca_76_1   (Giant panda)   26
Canis_familiaris_76_3.1   (Dog)   37
Felis_catus_76_6.2   (Domestic cat)   19
Equus_caballus_76_2   (Horse)   15
Myotis_lucifugus_76_2.0   (Little brown bat)   22
Pteropus_vampyrus_76_1   (Large flying fox)   22
Sorex_araneus_76_1   (European shrew)   13
Erinaceus_europaeus_76   (Western European hedgehog)   18
Procavia_capensis_76_1   (Cape rock hyrax)   18
Loxodonta_africana_76_3   (African savanna elephant)   19
Echinops_telfairi_76   (Small Madagascar hedgehog)   17
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   43
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   14
Macropus_eugenii_76_1.0   (Tammar wallaby)   15
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   18
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   19
Ornithorhynchus_anatinus_76_5   (Platypus)   14
Saccoglossus_kowalevskii_v3.0 15
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   5
Gallus_gallus_76_4   (Chicken)   22
Anas_platyrhynchos_76_1.0   (Mallard)   10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   14
Anolis_carolinensis_76_2.0   (Green anole)   14
Xenopus_laevis_   (African clawed frog)   14
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_76_1   (Coelacanth)   12
Lepisosteus_oculatus_76   (Spotted gar)   22
Gadus_morhua_76_1   (Atlantic cod)   17
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   15
Takifugu_rubripes_76_4   (Torafugu)   24
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   26
Oryzias_latipes_76_1   (Japanese medaka)   15
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16
Poecilia_formosa_76   (Amazon molly)   19
Oreochromis_niloticus_76_1.0   (Nile tilapia)   22
Astyanax_mexicanus_76   (Mexican tetra)   23
Danio_rerio_76_9   (Zebrafish)   36
Oikopleura_dioica 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   12
Adineta_vaga 11
Octopus_bimaculoides_280 11
Crassostrea_gigas_22   (Pacific oyster)   27
Lottia_gigantea_   (Owl limpet)   16
Helobdella_robusta_ 29
Capitella_sp._I_ 16
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9
Heliconius_melpomene_   (Postman butterfly)   11
Bombyx_mori_   (Domestic silkworm)   5
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   7
Drosophila_grimshawi_1.3 8
Drosophila_willistoni_1.3 9
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 9
Drosophila_suzukii 8
Drosophila_yakuba_1.3 9
Drosophila_simulans_1.3 13
Drosophila_sechellia_1.3 8
Drosophila_melanogaster_76_5   (Fruit fly)   15
Drosophila_erecta_1.3 8
Drosophila_ananassae_1.3 8
Drosophila_virilis_1.2 10
Drosophila_mojavensis_1.3 8
Megaselia_scalaris_22 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   13
Anopheles_darlingi_22   (American malaria mosquito)   11
Anopheles_gambiae_49_3j   (African malaria mosquito)   6
Tribolium_castaneum_3.0   (Red flour beetle)   6
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   10
Strigamia_maritima_22 10
Sarcoptes_scabiei 3
Tetranychus_urticae_   (Two-spotted spider mite)   10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   9
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 7
Echinococcus_multilocularis_ 11
Echinococcus_granulosus_ 13
Taenia_solium_   (Pork tapeworm)   8
Schistosoma_mansoni_ 16
Mnemiopsis_leidyi   (Sea walnut)   22
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 26
Nematostella_vectensis_1.0   (Starlet sea anemone)   8
Hydra_vulgaris 5
Amphimedon_queenslandica 16
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Chlamydomonas_reinhardtii_4.0 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 1
Anabaena_variabilis_ATCC_29413 0
Conexibacter_woesei_DSM_14684 2
Olsenella_uli_DSM_7084 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 0
Desulfotomaculum_acetoxidans_DSM_771 0
Eubacterium_eligens_ATCC_27750 1
Heliobacterium_modesticaldum_Ice1 0
Clostridium_cellulovorans_743B 0
Streptococcus_agalactiae_A909 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 3
Chitinophaga_pinensis_DSM_2588 1
Flexibacter_litoralis_DSM_6794 1
Fibrella_aestuarina 2
Dyadobacter_fermentans_DSM_18053 2
Cytophaga_hutchinsonii_ATCC_33406 3
Spirosoma_linguale_DSM_74 1
Porphyromonas_asaccharolytica_DSM_20707 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 1
Fluviicola_taffensis_DSM_16823 0
Lacinutrix_sp._5H-3-7-4 0
Maribacter_sp._HTCC2170 0
Robiginitalea_biformata_HTCC2501 1
Zobellia_galactanivorans 1
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 0
Polaribacter_sp._MED152 0
Capnocytophaga_canimorsus_Cc5 0
Flavobacterium_indicum_GPTSA100-9 1
Opitutus_terrae_PB90-1 3
Granulicella_tundricola_MP5ACTX9 0
Bdellovibrio_bacteriovorus_HD100 1
Babela_massiliensis 0
Pseudoalteromonas_sp._SM9913 0
Hahella_chejuensis_KCTC_2396 1
Legionella_longbeachae_NSW150 0
Sulfolobus_tokodaii_str._7 0
Methanosaeta_thermophila_PT 0
Methanoplanus_petrolearius_DSM_11571 2
Thermococcus_gammatolerans_EJ3 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   39
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   13
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   5
Corynebacterium_argentoratense_DSM_44202 1
Deinococcus_peraridilitoris_DSM_19664 1
Desulfitobacterium_hafniense_DCB-2 0
Clostridium_saccharobutylicum_DSM_13864 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1
Streptococcus_agalactiae_GD201008-001 1
Emticicia_oligotrophica_DSM_17448 0
Bdellovibrio_bacteriovorus_str._Tiberius 1
Anaeromyxobacter_dehalogenans_2CP-C 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   29
Pan_troglodytes_69_2.1.4   (Chimpanzee)   24
Gorilla_gorilla_69_3.1   (Western gorilla)   24
Pongo_abelii_69_2   (Sumatran orangutan)   19
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   21
Macaca_mulatta_69_1   (Rhesus monkey)   23
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   27
Otolemur_garnettii_69_3   (Small-eared galago)   18
Microcebus_murinus_69_1   (Gray mouse lemur)   21
Rattus_norvegicus_69_3.4   (Norway rat)   29
Mus_musculus_69_38   (House mouse)   21
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   24
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   16
Cavia_porcellus_69_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_69_2   (Rabbit)   23
Ochotona_princeps_69   (American pika)   18
Tupaia_belangeri_69   (Northern tree shrew)   16
Sus_scrofa_69_10.2   (Pig)   25
Bos_taurus_69_3.1   (Cattle)   23
Vicugna_pacos_69_1   (Alpaca)   12
Tursiops_truncatus_69_1   (Bottlenose dolphin)   24
Mustela_putorius_furo_69_1.0   (Domestic ferret)   31
Ailuropoda_melanoleuca_69_1   (Giant panda)   26
Canis_familiaris_69_3.1   (Dog)   29
Felis_catus_69   (Domestic cat)   18
Equus_caballus_69_2   (Horse)   15
Myotis_lucifugus_69_2.0   (Little brown bat)   20
Pteropus_vampyrus_69_1   (Large flying fox)   22
Sorex_araneus_69_1   (European shrew)   13
Erinaceus_europaeus_69   (Western European hedgehog)   18
Procavia_capensis_69_1   (Cape rock hyrax)   18
Loxodonta_africana_69_3   (African savanna elephant)   18
Echinops_telfairi_69   (Small Madagascar hedgehog)   17
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   22
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   14
Macropus_eugenii_69_1.0   (Tammar wallaby)   15
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   16
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   18
Ornithorhynchus_anatinus_69_5   (Platypus)   14
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   4
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_69_2.0   (Green anole)   9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   11
Latimeria_chalumnae_69_1   (Coelacanth)   11
Gadus_morhua_69_1   (Atlantic cod)   13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   14
Takifugu_rubripes_69_4   (Torafugu)   12
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   21
Oryzias_latipes_69_1   (Japanese medaka)   14
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   20
Danio_rerio_69_9   (Zebrafish)   22
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   7
Drosophila_melanogaster_69_5   (Fruit fly)   10
Caenorhabditis_elegans_69_215   (Roundworm)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   96
Homo_sapiens__(NCBI_version)   (Human)   39
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   24
Heliconius_numata__(Incomplete) 0
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
NCBI_plasmid_sequences_(Plasmids) 1
NCBI_2017_08_genome 13210
NCBI_viral_sequences_(Viral) 146
TargetDB__(Targets) 86
PDB_chains_(SCOP_1.75)_(PDB) 3
Protein_Data_Bank_(all_PDB_sequenc) 11
UniProt__viral_sequences_(Viral) 849
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 46
STRING_v9.0.5_(STRING) 632
Uniprot_2018_03_genome 45355

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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