SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,49299,89260,89260 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49299 - PKD domain
89260 - Collagen-binding domain
89260 - Collagen-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Clostridium_perfringens_ATCC_13124 1
Clostridium_botulinum_A_str._ATCC_3502 0
Brevibacillus_brevis_NBRC_100599 1
Lysinibacillus_sphaericus_C3-41 1

Strains
Genome     Number
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_E3_str._Alaska_E43 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0

Others
Genome     Number
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 6
Uniprot_2018_03_genome 432
NCBI_2017_08_genome 125

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]