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  Home > SCOP hierarchy > Domain combination - _gap_,49313,49313,49313,49313,49313,_gap_

Domain combinations for _gap_,49313,49313,49313,49313,49313,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   50
Pan_troglodytes_76_2.1.4   (Chimpanzee)   24
Gorilla_gorilla_76_3.1   (Western gorilla)   31
Pongo_abelii_76_2   (Sumatran orangutan)   20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   19
Papio_anubis_76   (Olive baboon)   19
Macaca_mulatta_76_1   (Rhesus monkey)   30
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   34
Otolemur_garnettii_76_3   (Small-eared galago)   16
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   22
Mus_musculus_76_38   (House mouse)   35
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   18
Cavia_porcellus_76_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_76_2   (Rabbit)   19
Ochotona_princeps_76   (American pika)   13
Tupaia_belangeri_76   (Northern tree shrew)   11
Sus_scrofa_76_10.2   (Pig)   12
Bos_taurus_76_3.1   (Cattle)   19
Ovis_aries_76_3.1   (Sheep)   22
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   18
Mustela_putorius_furo_76_1.0   (Domestic ferret)   16
Ailuropoda_melanoleuca_76_1   (Giant panda)   19
Canis_familiaris_76_3.1   (Dog)   30
Felis_catus_76_6.2   (Domestic cat)   20
Equus_caballus_76_2   (Horse)   19
Myotis_lucifugus_76_2.0   (Little brown bat)   21
Pteropus_vampyrus_76_1   (Large flying fox)   19
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   25
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   18
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_76_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   22
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_76_5   (Platypus)   9
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   9
Gallus_gallus_76_4   (Chicken)   15
Anas_platyrhynchos_76_1.0   (Mallard)   17
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   15
Ficedula_albicollis_76_1.0   (Collared flycatcher)   17
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_76_2.0   (Green anole)   15
Xenopus_laevis_   (African clawed frog)   20
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_76_1   (Coelacanth)   14
Lepisosteus_oculatus_76   (Spotted gar)   23
Gadus_morhua_76_1   (Atlantic cod)   13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   17
Takifugu_rubripes_76_4   (Torafugu)   55
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   14
Oryzias_latipes_76_1   (Japanese medaka)   16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15
Poecilia_formosa_76   (Amazon molly)   20
Oreochromis_niloticus_76_1.0   (Nile tilapia)   30
Astyanax_mexicanus_76   (Mexican tetra)   15
Danio_rerio_76_9   (Zebrafish)   30
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 2
Octopus_bimaculoides_280 100
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   5
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Daphnia_pulex_   (Common water flea)   0
Sarcoptes_scabiei 0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   2
Hydra_vulgaris 0
Amphimedon_queenslandica 1
Proterospongia_sp._ATCC_50818_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 0
Pseudanabaena_sp._PCC_7367 0
Nostoc_sp._PCC_7524 0
Anabaena_sp._90 1
Conexibacter_woesei_DSM_14684 1
Pedobacter_heparinus_DSM_2366 0
Isosphaera_pallida_ATCC_43644 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Candidatus_Puniceispirillum_marinum_IMCC1322 0
Saccharophagus_degradans_2-40 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   20
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Dactylococcopsis_salina_PCC_8305 0
Leptospira_interrogans_serovar_Lai_str._56601 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   28
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22
Gorilla_gorilla_69_3.1   (Western gorilla)   22
Pongo_abelii_69_2   (Sumatran orangutan)   18
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   18
Macaca_mulatta_69_1   (Rhesus monkey)   20
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21
Otolemur_garnettii_69_3   (Small-eared galago)   16
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   20
Mus_musculus_69_38   (House mouse)   27
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   12
Cavia_porcellus_69_3   (Domestic guinea pig)   14
Oryctolagus_cuniculus_69_2   (Rabbit)   18
Ochotona_princeps_69   (American pika)   13
Tupaia_belangeri_69   (Northern tree shrew)   11
Sus_scrofa_69_10.2   (Pig)   9
Bos_taurus_69_3.1   (Cattle)   19
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   18
Mustela_putorius_furo_69_1.0   (Domestic ferret)   16
Ailuropoda_melanoleuca_69_1   (Giant panda)   19
Canis_familiaris_69_3.1   (Dog)   24
Felis_catus_69   (Domestic cat)   9
Equus_caballus_69_2   (Horse)   19
Myotis_lucifugus_69_2.0   (Little brown bat)   21
Pteropus_vampyrus_69_1   (Large flying fox)   19
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   17
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_69_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   20
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_69_5   (Platypus)   7
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   8
Gallus_gallus_69_2   (Chicken)   14
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   11
Anolis_carolinensis_69_2.0   (Green anole)   10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_69_1   (Coelacanth)   13
Gadus_morhua_69_1   (Atlantic cod)   13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   14
Takifugu_rubripes_69_4   (Torafugu)   22
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   12
Oryzias_latipes_69_1   (Japanese medaka)   13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   24
Danio_rerio_69_9   (Zebrafish)   23
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   60
Homo_sapiens__(NCBI_version)   (Human)   32
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   27
Loa_loa_v3.3_(Request)   (Eye worm)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 410
Uniprot_2018_03_genome 53924
NCBI_2017_08_genome 7918

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.